Literature DB >> 25002145

Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis.

Weiqiang Qian1, Daisuke Miki2, Mingguang Lei3, Xiaohong Zhu3, Huiming Zhang3, Yunhua Liu3, Yan Li2, Zhaobo Lang3, Jing Wang2, Kai Tang3, Renyi Liu2, Jian-Kang Zhu4.   

Abstract

DNA methylation patterns are dynamically controlled by DNA methylation and active DNA demethylation, but the mechanisms of regulation of active DNA demethylation are not well understood. Through forward genetic screens for Arabidopsis mutants showing DNA hypermethylation at specific loci and increased silencing of reporter genes, we identified IDM2 (increased DNA methylation 2) as a regulator of DNA demethylation and gene silencing. IDM2 dysfunction causes DNA hypermethylation and silencing of reporter genes and some endogenous genes. These effects of idm2 mutations are similar to those of mutations in IDM1, a regulator of active DNA demethylation. IDM2 encodes an α-crystallin domain protein in the nucleus. IDM2 and IDM1 interact physically and partially colocalize at discrete subnuclear foci. IDM2 is required for the full activity of H3K18 acetylation but not H3K23 acetylation of IDM1 in planta. Our results suggest that IDM2 functions in active DNA demethylation and in antisilencing by regulating IDM1.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25002145      PMCID: PMC4302764          DOI: 10.1016/j.molcel.2014.06.008

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  48 in total

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4.  Crystal structure of a small heat-shock protein.

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Review 5.  Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing.

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Review 8.  Regulation and function of DNA methylation in plants and animals.

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Authors:  Zhizhong Gong; Teresa Morales-Ruiz; Rafael R Ariza; Teresa Roldán-Arjona; Lisa David; Jian Kang Zhu
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10.  Cellular programming of plant gene imprinting.

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  21 in total

1.  Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis.

Authors:  Wen-Feng Nie; Mingguang Lei; Mingxuan Zhang; Kai Tang; Huan Huang; Cuijun Zhang; Daisuke Miki; Pan Liu; Yu Yang; Xingang Wang; Heng Zhang; Zhaobo Lang; Na Liu; Xuechen Xu; Ramesh Yelagandula; Huiming Zhang; Zhidan Wang; Xiaoqiang Chai; Andrea Andreucci; Jing-Quan Yu; Frederic Berger; Rosa Lozano-Duran; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-30       Impact factor: 11.205

2.  Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit.

Authors:  Zhaobo Lang; Yihai Wang; Kai Tang; Dengguo Tang; Tatsiana Datsenka; Jingfei Cheng; Yijing Zhang; Avtar K Handa; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

3.  The methyl-CpG-binding protein MBD7 facilitates active DNA demethylation to limit DNA hyper-methylation and transcriptional gene silencing.

Authors:  Zhaobo Lang; Mingguang Lei; Xingang Wang; Kai Tang; Daisuke Miki; Huiming Zhang; Satendra K Mangrauthia; Wenshan Liu; Wenfeng Nie; Guojie Ma; Jun Yan; Cheng-Guo Duan; Chuan-Chih Hsu; Chunlei Wang; W Andy Tao; Zhizhong Gong; Jian-Kang Zhu
Journal:  Mol Cell       Date:  2015-02-12       Impact factor: 17.970

4.  Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis.

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Journal:  Plant Physiol       Date:  2015-01-15       Impact factor: 8.340

5.  The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status.

Authors:  Dongming Li; Ana Marie S Palanca; So Youn Won; Lei Gao; Ying Feng; Ajay A Vashisht; Li Liu; Yuanyuan Zhao; Xigang Liu; Xiuyun Wu; Shaofang Li; Brandon Le; Yun Ju Kim; Guodong Yang; Shengben Li; Jinyuan Liu; James A Wohlschlegel; Hongwei Guo; Beixin Mo; Xuemei Chen; Julie A Law
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6.  Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis.

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7.  Fine mapping and characterization of RLL6 locus required for anti-silencing of a transgene and DNA demethylation in Arabidopsis thaliana.

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8.  Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana.

Authors:  Qi Li; Xiaokang Wang; Han Sun; Jun Zeng; Zhendong Cao; Yan Li; Weiqiang Qian
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9.  The Arabidopsis acetylated histone-binding protein BRAT1 forms a complex with BRP1 and prevents transcriptional silencing.

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10.  The cytosolic Fe-S cluster assembly component MET18 is required for the full enzymatic activity of ROS1 in active DNA demethylation.

Authors:  Xiaokang Wang; Qi Li; Wei Yuan; Zhendong Cao; Bei Qi; Suresh Kumar; Yan Li; Weiqiang Qian
Journal:  Sci Rep       Date:  2016-05-19       Impact factor: 4.379

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