Literature DB >> 28436537

Error-prone replication bypass of the imidazole ring-opened formamidopyrimidine deoxyguanosine adduct.

Yan Sha1, Irina G Minko1, Chanchal K Malik2, Carmelo J Rizzo2, R Stephen Lloyd1,3.   

Abstract

Addition of hydroxyl radicals to the C8 position of 2'-deoxyguanosine generates an 8-hydroxyguanyl radical that can be converted into either 8-oxo-7,8-dihydro-2'-deoxyguanosine or N-(2-deoxy-d-pentofuranosyl)-N-(2,6-diamino-4-hydroxy-5-formamidopyrimidine) (Fapy-dG). The Fapy-dG adduct can adopt different conformations and in particular, can exist in an unnatural α anomeric configuration in addition to canonical β configuration. Previous studies reported that in 5'-TGN-3' sequences, Fapy-dG predominantly induced G → T transversions in both mammalian cells and Escherichia coli, suggesting that mutations could be formed either via insertion of a dA opposite the 5' dT due to primer/template misalignment or as result of direct miscoding. To address this question, single-stranded vectors containing a site-specific Fapy-dG adduct were generated to vary the identity of the 5' nucleotide. Following vector replication in primate cells (COS7), complex mutation spectra were observed that included ∼3-5% G → T transversions and ∼14-21% G → A transitions. There was no correlation apparent between the identity of the 5' nucleotide and spectra of mutations. When conditions for vector preparation were modified to favor the β anomer, frequencies of both G → T and G → A substitutions were significantly reduced. Mutation frequencies in wild-type E. coli and a mutant deficient in damage-inducible DNA polymerases were significantly lower than detected in COS7 and spectra were dominated by deletions. Thus, mutagenic bypass of Fapy-dG can proceed via mechanisms that are different from the previously proposed primer/template misalignment or direct misinsertions of dA or dT opposite to the β anomer of Fapy-dG. Environ. Mol. Mutagen. 58:182-189, 2017.
© 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  COS7; DNA lesion; Escherichia coli; mutagenesis; oxidative damage

Mesh:

Substances:

Year:  2017        PMID: 28436537      PMCID: PMC5476229          DOI: 10.1002/em.22089

Source DB:  PubMed          Journal:  Environ Mol Mutagen        ISSN: 0893-6692            Impact factor:   3.216


  44 in total

1.  Base pairing and replicative processing of the formamidopyrimidine-dG DNA lesion.

Authors:  Matthias Ober; Heiko Müller; Carsten Pieck; Johannes Gierlich; Thomas Carell
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

2.  Error prone translesion synthesis past gamma-hydroxypropano deoxyguanosine, the primary acrolein-derived adduct in mammalian cells.

Authors:  Manorama Kanuri; Irina G Minko; Lubomir V Nechev; Thomas M Harris; Constance M Harris; R Stephen Lloyd
Journal:  J Biol Chem       Date:  2002-03-11       Impact factor: 5.157

3.  Unlike catalyzing error-free bypass of 8-oxodGuo, DNA polymerase λ is responsible for a significant part of Fapy·dG-induced G → T mutations in human cells.

Authors:  Paritosh Pande; Kazuhiro Haraguchi; Yu-Lin Jiang; Marc M Greenberg; Ashis K Basu
Journal:  Biochemistry       Date:  2015-03-06       Impact factor: 3.162

4.  Alpha-anomeric deoxynucleotides, anoxic products of ionizing radiation, are substrates for the endonuclease IV-type AP endonucleases.

Authors:  Alexander A Ishchenko; Hiroshi Ide; Dindial Ramotar; Georgy Nevinsky; Murat Saparbaev
Journal:  Biochemistry       Date:  2004-12-07       Impact factor: 3.162

5.  Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.

Authors:  Gerald W Hsu; Matthias Ober; Thomas Carell; Lorena S Beese
Journal:  Nature       Date:  2004-08-22       Impact factor: 49.962

6.  Selective Incision of the alpha-N-Methyl-Formamidopyrimidine Anomer by Escherichia coli Endonuclease IV.

Authors:  Plamen P Christov; Surajit Banerjee; Michael P Stone; Carmelo J Rizzo
Journal:  J Nucleic Acids       Date:  2010-07-25

7.  Unexpected non-Hoogsteen-based mutagenicity mechanism of FaPy-DNA lesions.

Authors:  Tim H Gehrke; Ulrike Lischke; Karola L Gasteiger; Sabine Schneider; Simone Arnold; Heiko C Müller; David S Stephenson; Hendrik Zipse; Thomas Carell
Journal:  Nat Chem Biol       Date:  2013-05-19       Impact factor: 15.040

8.  Highly error-free role of DNA polymerase eta in the replicative bypass of UV-induced pyrimidine dimers in mouse and human cells.

Authors:  Jung-Hoon Yoon; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-12       Impact factor: 11.205

9.  Induction of frameshift and base pair substitution mutations by the major DNA adduct of the endogenous carcinogen malondialdehyde.

Authors:  Laurie A VanderVeen; Muhammed F Hashim; Yu Shyr; Lawrence J Marnett
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-05       Impact factor: 11.205

Review 10.  Formation of ring-opened and rearranged products of guanine: mechanisms and biological significance.

Authors:  N R Jena; P C Mishra
Journal:  Free Radic Biol Med       Date:  2012-04-21       Impact factor: 7.376

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  4 in total

1.  Sequence context effects of replication of Fapy•dG in three mutational hot spot sequences of the p53 gene in human cells.

Authors:  Jan Henric T Bacurio; Haozhe Yang; Spandana Naldiga; Brent V Powell; Benjamin J Ryan; Bret D Freudenthal; Marc M Greenberg; Ashis K Basu
Journal:  DNA Repair (Amst)       Date:  2021-08-16

2.  Mutagenic potential of nitrogen mustard-induced formamidopyrimidine DNA adduct: Contribution of the non-canonical α-anomer.

Authors:  Irina G Minko; Carmelo J Rizzo; R Stephen Lloyd
Journal:  J Biol Chem       Date:  2017-09-28       Impact factor: 5.157

3.  Molecular beacons with oxidized bases report on substrate specificity of DNA oxoguanine glycosylases.

Authors:  Jingjing Sun; Nicole M Antczak; Hailey L Gahlon; Shana J Sturla
Journal:  Chem Sci       Date:  2022-02-16       Impact factor: 9.825

4.  A guardian residue hinders insertion of a Fapy•dGTP analog by modulating the open-closed DNA polymerase transition.

Authors:  Mallory R Smith; David D Shock; William A Beard; Marc M Greenberg; Bret D Freudenthal; Samuel H Wilson
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

  4 in total

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