Literature DB >> 34464900

Sequence context effects of replication of Fapy•dG in three mutational hot spot sequences of the p53 gene in human cells.

Jan Henric T Bacurio1, Haozhe Yang2, Spandana Naldiga1, Brent V Powell1, Benjamin J Ryan3, Bret D Freudenthal3, Marc M Greenberg4, Ashis K Basu5.   

Abstract

Fapy•dG and 8-OxodGuo are formed in DNA from a common N7-dG radical intermediate by reaction with hydroxyl radical. Although cellular levels of Fapy•dG are often greater, its effects on replication are less well understood than those of 8-OxodGuo. In this study plasmid DNA containing Fapy•dG in three mutational hotspots of human cancers, codons 248, 249, and 273 of the p53 tumor suppressor gene, was replicated in HEK 293T cells. TLS efficiencies for the Fapy•dG containing plasmids varied from 72 to 89%, and were further reduced in polymerase-deficient cells. The mutation frequency (MF) of Fapy•dG ranged from 7.3 to 11.6%, with G→T and G→A as major mutations in codons 248 and 249 compared to primarily G→T in codon 273. Increased MF in hPol ι-, hPol κ-, and hPol ζ-deficient cells suggested that these polymerases more frequently insert the correct nucleotide dC opposite Fapy•dG, whereas decreased G→A in codons 248 and 249 and reduction of all mutations in codon 273 in hPol λ-deficient cells indicated hPol λ's involvement in Fapy•dG mutagenesis. In vitro kinetic analysis using isolated translesion synthesis polymerases and hPol λ incompletely corroborated the mutagenesis experiments, indicating codependence on other proteins in the cellular milieu. In conclusion, Fapy•dG mutagenesis is dependent on the DNA sequence context, but its bypass by the TLS polymerases is largely error-free.
Copyright © 2021 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  2ʹ-deoxyguanosine lesion; Mutagenesis; Oxidative DNA damage; Polymerase knockout; Translesion synthesis

Mesh:

Substances:

Year:  2021        PMID: 34464900      PMCID: PMC8616820          DOI: 10.1016/j.dnarep.2021.103213

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  83 in total

Review 1.  Eukaryotic DNA polymerases: proposal for a revised nomenclature.

Authors:  P M Burgers; E V Koonin; E Bruford; L Blanco; K C Burtis; M F Christman; W C Copeland; E C Friedberg; F Hanaoka; D C Hinkle; C W Lawrence; M Nakanishi; H Ohmori; L Prakash; S Prakash; C A Reynaud; A Sugino; T Todo; Z Wang; J C Weill; R Woodgate
Journal:  J Biol Chem       Date:  2001-09-28       Impact factor: 5.157

2.  Site-Specific Incorporation of N-(2'-Deoxyguanosine-8-yl)-6-aminochrysene Adduct in DNA and Its Replication in Human Cells.

Authors:  Paritosh Pande; Kimberly R Rebello; Arindom Chatterjee; Spandana Naldiga; Ashis K Basu
Journal:  Chem Res Toxicol       Date:  2020-07-07       Impact factor: 3.739

3.  Unlike catalyzing error-free bypass of 8-oxodGuo, DNA polymerase λ is responsible for a significant part of Fapy·dG-induced G → T mutations in human cells.

Authors:  Paritosh Pande; Kazuhiro Haraguchi; Yu-Lin Jiang; Marc M Greenberg; Ashis K Basu
Journal:  Biochemistry       Date:  2015-03-06       Impact factor: 3.162

4.  Somatic point mutations in the p53 gene of human tumors and cell lines: updated compilation.

Authors:  M Hollstein; B Shomer; M Greenblatt; T Soussi; E Hovig; R Montesano; C C Harris
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

5.  DNA damage induced in cells by gamma and UVA radiation as measured by HPLC/GC-MS and HPLC-EC and Comet assay.

Authors:  J P Pouget; T Douki; M J Richard; J Cadet
Journal:  Chem Res Toxicol       Date:  2000-07       Impact factor: 3.739

6.  Fidelity of nucleotide insertion at 8-oxo-7,8-dihydroguanine by mammalian DNA polymerase delta. Steady-state and pre-steady-state kinetic analysis.

Authors:  H J Einolf; F P Guengerich
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

7.  Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nucleotide excision repair.

Authors:  Yuqin Cai; Dinshaw J Patel; Nicholas E Geacintov; Suse Broyde
Journal:  J Mol Biol       Date:  2007-09-19       Impact factor: 5.469

8.  Repair of formamidopyrimidines in DNA involves different glycosylases: role of the OGG1, NTH1, and NEIL1 enzymes.

Authors:  Jingping Hu; Nadja C de Souza-Pinto; Kazuhiro Haraguchi; Barbara A Hogue; Pawel Jaruga; Marc M Greenberg; Miral Dizdaroglu; Vilhelm A Bohr
Journal:  J Biol Chem       Date:  2005-10-11       Impact factor: 5.157

9.  Promiscuous mismatch extension by human DNA polymerase lambda.

Authors:  Angel J Picher; Miguel García-Díaz; Katarzyna Bebenek; Lars C Pedersen; Thomas A Kunkel; Luis Blanco
Journal:  Nucleic Acids Res       Date:  2006-06-28       Impact factor: 16.971

10.  DNA polymerases κ and ζ cooperatively perform mutagenic translesion synthesis of the C8-2'-deoxyguanosine adduct of the dietary mutagen IQ in human cells.

Authors:  Arindam Bose; Paritosh Pande; Vijay P Jasti; Amy D Millsap; Edward K Hawkins; Carmelo J Rizzo; Ashis K Basu
Journal:  Nucleic Acids Res       Date:  2015-07-28       Impact factor: 16.971

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  2 in total

1.  Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication.

Authors:  Benjamin J Ryan; Haozhe Yang; Jan Henric T Bacurio; Mallory R Smith; Ashis K Basu; Marc M Greenberg; Bret D Freudenthal
Journal:  J Am Chem Soc       Date:  2022-05-02       Impact factor: 16.383

Review 2.  Beyond the Lesion: Back to High Fidelity DNA Synthesis.

Authors:  Joseph D Kaszubowski; Michael A Trakselis
Journal:  Front Mol Biosci       Date:  2022-01-05
  2 in total

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