Literature DB >> 15322558

Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.

Gerald W Hsu1, Matthias Ober, Thomas Carell, Lorena S Beese.   

Abstract

Aerobic respiration generates reactive oxygen species that can damage guanine residues and lead to the production of 8-oxoguanine (8oxoG), the major mutagenic oxidative lesion in the genome. Oxidative damage is implicated in ageing and cancer, and its prevalence presents a constant challenge to DNA polymerases that ensure accurate transmission of genomic information. When these polymerases encounter 8oxoG, they frequently catalyse misincorporation of adenine in preference to accurate incorporation of cytosine. This results in the propagation of G to T transversions, which are commonly observed somatic mutations associated with human cancers. Here, we present sequential snapshots of a high-fidelity DNA polymerase during both accurate and mutagenic replication of 8oxoG. Comparison of these crystal structures reveals that 8oxoG induces an inversion of the mismatch recognition mechanisms that normally proofread DNA, such that the 8oxoG.adenine mismatch mimics a cognate base pair whereas the 8oxoG.cytosine base pair behaves as a mismatch. These studies reveal a fundamental mechanism of error-prone replication and show how 8oxoG, and DNA lesions in general, can form mismatches that evade polymerase error-detection mechanisms, potentially leading to the stable incorporation of lethal mutations.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15322558     DOI: 10.1038/nature02908

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  140 in total

1.  A new proofreading mechanism for lesion bypass by DNA polymerase-λ.

Authors:  Emmanuele Crespan; Giovanni Maga; Ulrich Hübscher
Journal:  EMBO Rep       Date:  2011-12-23       Impact factor: 8.807

2.  Synthesis of N2-alkyl-8-oxo-7,8-dihydro-2'-deoxyguanosine derivatives and effects of these modifications on RNA duplex stability.

Authors:  Arunkumar Kannan; Cynthia J Burrows
Journal:  J Org Chem       Date:  2010-12-30       Impact factor: 4.354

3.  Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase η.

Authors:  Timothy D Silverstein; Rinku Jain; Robert E Johnson; Louise Prakash; Satya Prakash; Aneel K Aggarwal
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

4.  Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.

Authors:  Weina Wang; Eugene Y Wu; Homme W Hellinga; Lorena S Beese
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

Review 5.  The Toolbox for Modified Aptamers.

Authors:  Sergey A Lapa; Alexander V Chudinov; Edward N Timofeev
Journal:  Mol Biotechnol       Date:  2016-02       Impact factor: 2.695

6.  The use of modified and non-natural nucleotides provide unique insights into pro-mutagenic replication catalyzed by polymerase eta.

Authors:  Jung-Suk Choi; Anvesh Dasari; Peter Hu; Stephen J Benkovic; Anthony J Berdis
Journal:  Nucleic Acids Res       Date:  2015-12-29       Impact factor: 16.971

7.  Mechanism of efficient and accurate nucleotide incorporation opposite 7,8-dihydro-8-oxoguanine by Saccharomyces cerevisiae DNA polymerase eta.

Authors:  Karissa D Carlson; M Todd Washington
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

Review 8.  Chlamydomonas reinhardtii: a convenient model system for the study of DNA repair in photoautotrophic eukaryotes.

Authors:  Daniel Vlcek; Andrea Sevcovicová; Barbara Sviezená; Eliska Gálová; Eva Miadoková
Journal:  Curr Genet       Date:  2007-11-09       Impact factor: 3.886

9.  Error-prone replication bypass of the imidazole ring-opened formamidopyrimidine deoxyguanosine adduct.

Authors:  Yan Sha; Irina G Minko; Chanchal K Malik; Carmelo J Rizzo; R Stephen Lloyd
Journal:  Environ Mol Mutagen       Date:  2017-04-24       Impact factor: 3.216

10.  Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.

Authors:  Yan Qi; Marie C Spong; Kwangho Nam; Anirban Banerjee; Sao Jiralerspong; Martin Karplus; Gregory L Verdine
Journal:  Nature       Date:  2009-12-10       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.