Literature DB >> 23685671

Unexpected non-Hoogsteen-based mutagenicity mechanism of FaPy-DNA lesions.

Tim H Gehrke1, Ulrike Lischke, Karola L Gasteiger, Sabine Schneider, Simone Arnold, Heiko C Müller, David S Stephenson, Hendrik Zipse, Thomas Carell.   

Abstract

8-Oxopurines (8-oxodG and 8-oxodA) and formamidopyrimidines (FaPydG and FaPydA) are major oxidative DNA lesions involved in cancer development and aging. Their mutagenicity is believed to result from a conformational shift of the N9-C1' glycosidic bonds from anti to syn, which allows the lesions to form noncanonical Hoogsteen-type base pairs with incoming triphosphates during DNA replication. Here we present biochemical data and what are to our knowledge the first crystal structures of carbocyclic FaPydA and FaPydG containing DNA in complex with a high-fidelity polymerase. Crystallographic snapshots show that the cFaPy lesions keep the anti geometry of the glycosidic bond during error-free and error-prone replication. The observed dG·dC→dT·dA transversion mutations are the result of base shifting and tautomerization.

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Year:  2013        PMID: 23685671     DOI: 10.1038/nchembio.1254

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  46 in total

1.  Base pairing and replicative processing of the formamidopyrimidine-dG DNA lesion.

Authors:  Matthias Ober; Heiko Müller; Carsten Pieck; Johannes Gierlich; Thomas Carell
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

2.  Complementary base pairing and the origin of substitution mutations.

Authors:  M D Topal; J R Fresco
Journal:  Nature       Date:  1976-09-23       Impact factor: 49.962

3.  Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.

Authors:  Gerald W Hsu; Matthias Ober; Thomas Carell; Lorena S Beese
Journal:  Nature       Date:  2004-08-22       Impact factor: 49.962

4.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

5.  Mutagenic conformation of 8-oxo-7,8-dihydro-2'-dGTP in the confines of a DNA polymerase active site.

Authors:  Vinod K Batra; William A Beard; Esther W Hou; Lars C Pedersen; Rajendra Prasad; Samuel H Wilson
Journal:  Nat Struct Mol Biol       Date:  2010-06-06       Impact factor: 15.369

6.  Gamma irradiation of 2'-deoxyadenosine in oxygen-free aqueous solutions: identification and conformational features of formamidopyrimidine nucleoside derivatives.

Authors:  S Raoul; M Bardet; J Cadet
Journal:  Chem Res Toxicol       Date:  1995 Oct-Nov       Impact factor: 3.739

Review 7.  Formation of ring-opened and rearranged products of guanine: mechanisms and biological significance.

Authors:  N R Jena; P C Mishra
Journal:  Free Radic Biol Med       Date:  2012-04-21       Impact factor: 7.376

8.  Chemical discrimination between dC and 5MedC via their hydroxylamine adducts.

Authors:  Martin Münzel; Lukas Lercher; Markus Müller; Thomas Carell
Journal:  Nucleic Acids Res       Date:  2010-09-02       Impact factor: 16.971

9.  Conformational analysis of nucleic acids revisited: Curves+.

Authors:  R Lavery; M Moakher; J H Maddocks; D Petkeviciute; K Zakrzewska
Journal:  Nucleic Acids Res       Date:  2009-07-22       Impact factor: 16.971

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  17 in total

1.  Structural biology: FaPy lesions and DNA mutations.

Authors:  Kent S Gates
Journal:  Nat Chem Biol       Date:  2013-07       Impact factor: 15.040

2.  Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair.

Authors:  Chenxu Zhu; Lining Lu; Jun Zhang; Zongwei Yue; Jinghui Song; Shuai Zong; Menghao Liu; Olivia Stovicek; Yi Qin Gao; Chengqi Yi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-27       Impact factor: 11.205

Review 3.  Excessive Reactive Oxygen Species and Exotic DNA Lesions as an Exploitable Liability.

Authors:  Safnas F AbdulSalam; Fathima Shazna Thowfeik; Edward J Merino
Journal:  Biochemistry       Date:  2016-09-13       Impact factor: 3.162

4.  Unlike catalyzing error-free bypass of 8-oxodGuo, DNA polymerase λ is responsible for a significant part of Fapy·dG-induced G → T mutations in human cells.

Authors:  Paritosh Pande; Kazuhiro Haraguchi; Yu-Lin Jiang; Marc M Greenberg; Ashis K Basu
Journal:  Biochemistry       Date:  2015-03-06       Impact factor: 3.162

5.  Synthesis of Oligonucleotides Containing the N6 -(2-Deoxy-α,β-d-erythropentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine (Fapy⋅dG) Oxidative Damage Product Derived from 2'-Deoxyguanosine.

Authors:  Haozhe Yang; Joel A Tang; Marc M Greenberg
Journal:  Chemistry       Date:  2020-04-09       Impact factor: 5.236

6.  Structural Basis for Error-Free Bypass of the 5-N-Methylformamidopyrimidine-dG Lesion by Human DNA Polymerase η and Sulfolobus solfataricus P2 Polymerase IV.

Authors:  Amritraj Patra; Surajit Banerjee; Tracy L Johnson Salyard; Chanchal K Malik; Plamen P Christov; Carmelo J Rizzo; Michael P Stone; Martin Egli
Journal:  J Am Chem Soc       Date:  2015-05-27       Impact factor: 15.419

7.  Single-cell Damagenome Profiling by Linear Copying and Splitting based Whole Genome Amplification (LCS-WGA).

Authors:  Yichi Niu; Qiangyuan Zhu; Chenghang Zong
Journal:  Bio Protoc       Date:  2022-03-20

8.  Sequence context effects of replication of Fapy•dG in three mutational hot spot sequences of the p53 gene in human cells.

Authors:  Jan Henric T Bacurio; Haozhe Yang; Spandana Naldiga; Brent V Powell; Benjamin J Ryan; Bret D Freudenthal; Marc M Greenberg; Ashis K Basu
Journal:  DNA Repair (Amst)       Date:  2021-08-16

9.  Error-prone replication bypass of the imidazole ring-opened formamidopyrimidine deoxyguanosine adduct.

Authors:  Yan Sha; Irina G Minko; Chanchal K Malik; Carmelo J Rizzo; R Stephen Lloyd
Journal:  Environ Mol Mutagen       Date:  2017-04-24       Impact factor: 3.216

10.  Configurational and Conformational Equilibria of N6-(2-Deoxy-d-erythro-pentofuranosyl)-2,6-diamino-3,4-dihydro-4-oxo-5- N-methylformamidopyrimidine (MeFapy-dG) Lesion in DNA.

Authors:  Stephanie N Bamberger; Chanchal K Malik; Markus W Voehler; Summer K Brown; Hope Pan; Tracy L Johnson-Salyard; Carmelo J Rizzo; Michael P Stone
Journal:  Chem Res Toxicol       Date:  2018-08-31       Impact factor: 3.739

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