Literature DB >> 2842793

Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon.

J J Clare1, M Belcourt, P J Farabaugh.   

Abstract

The Ty (transposon yeast) family of retroviral-like transposons include two genes, TYA and TYB, analogous to the gag and pol genes of metazoan retroviruses. TYB lies downstream of TYA, the two genes overlapping by 38 base pairs. The primary translation product of TYB is a TYA/TYB fusion protein whose expression has been inferred to occur by translational frameshifting within the overlap region. We show that the event leading to expression of TYB is very efficient, resulting in 20% read-through into TYB from TYA. We demonstrate that the Ty mRNA is colinear with the DNA sequence of the element, eliminating any pretranslational model for TYB expression. Frameshifting requires no particular sequence of the upstream TYA gene, nor any global RNA structure. Surprisingly, it can be promoted by a 14-base-pair oligonucleotide of the overlap region. The ability of this oligonucleotide to function is inhibited when it is positioned immediately downstream of an initiator AUG. We conclude that the TYB gene is expressed by an efficient ribosomal frameshifting event requiring a small oligonucleotide sequence derived from the TYA/TYB overlap region.

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Year:  1988        PMID: 2842793      PMCID: PMC282069          DOI: 10.1073/pnas.85.18.6816

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting.

Authors:  T Jacks; H E Varmus
Journal:  Science       Date:  1985-12-13       Impact factor: 47.728

2.  Reverse transcriptase activity and Ty RNA are associated with virus-like particles in yeast.

Authors:  J Mellor; M H Malim; K Gull; M F Tuite; S McCready; T Dibbayawan; S M Kingsman; A J Kingsman
Journal:  Nature       Date:  1985 Dec 12-18       Impact factor: 49.962

3.  Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression.

Authors:  J Clare; P Farabaugh
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

4.  Ty elements transpose through an RNA intermediate.

Authors:  J D Boeke; D J Garfinkel; C A Styles; G R Fink
Journal:  Cell       Date:  1985-03       Impact factor: 41.582

5.  Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA.

Authors:  R Benne; J Van den Burg; J P Brakenhoff; P Sloof; J H Van Boom; M C Tromp
Journal:  Cell       Date:  1986-09-12       Impact factor: 41.582

6.  Complete nucleotide sequence of a milk-transmitted mouse mammary tumor virus: two frameshift suppression events are required for translation of gag and pol.

Authors:  R Moore; M Dixon; R Smith; G Peters; C Dickson
Journal:  J Virol       Date:  1987-02       Impact factor: 5.103

7.  A comparison of yeast ribosomal protein gene DNA sequences.

Authors:  J L Teem; N Abovich; N F Kaufer; W F Schwindinger; J R Warner; A Levy; J Woolford; R J Leer; M M van Raamsdonk-Duin; W H Mager
Journal:  Nucleic Acids Res       Date:  1984-11-26       Impact factor: 16.971

8.  Expression strategies of the yeast retrotransposon Ty: a short sequence directs ribosomal frameshifting.

Authors:  W Wilson; M H Malim; J Mellor; A J Kingsman; S M Kingsman
Journal:  Nucleic Acids Res       Date:  1986-09-11       Impact factor: 16.971

9.  Murine leukemia virus protease is encoded by the gag-pol gene and is synthesized through suppression of an amber termination codon.

Authors:  Y Yoshinaka; I Katoh; T D Copeland; S Oroszlan
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

10.  Saccharomyces cerevisiae GAL1-GAL10 divergent promoter region: location and function of the upstream activating sequence UASG.

Authors:  R W West; R R Yocum; M Ptashne
Journal:  Mol Cell Biol       Date:  1984-11       Impact factor: 4.272

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  67 in total

1.  Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift.

Authors:  C L Burck; Y O Chernoff; R Liu; P J Farabaugh; S W Liebman
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  Frameshift signal transplantation and the unambiguous analysis of mutations in the yeast retrotransposon Ty1 Gag-Pol overlap region.

Authors:  J F Lawler; G V Merkulov; J D Boeke
Journal:  J Virol       Date:  2001-08       Impact factor: 5.103

3.  Transposition of a Ty3 GAG3-POL3 fusion mutant is limited by availability of capsid protein.

Authors:  J Kirchner; S B Sandmeyer; D B Forrest
Journal:  J Virol       Date:  1992-10       Impact factor: 5.103

4.  Translational frameshifting mediated by a viral sequence in plant cells.

Authors:  V Brault; W A Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-15       Impact factor: 11.205

5.  BUD22 affects Ty1 retrotransposition and ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  Arun Dakshinamurthy; Katherine M Nyswaner; Philip J Farabaugh; David J Garfinkel
Journal:  Genetics       Date:  2010-05-24       Impact factor: 4.562

Review 6.  Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Authors:  Pavel V Baranov; John F Atkins; Martina M Yordanova
Journal:  Nat Rev Genet       Date:  2015-08-11       Impact factor: 53.242

7.  Glycine tRNA mutants with normal anticodon loop size cause -1 frameshifting.

Authors:  D J O'Mahony; B H Mims; S Thompson; E J Murgola; J F Atkins
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

8.  Proteolytic processing of pol-TYB proteins from the yeast retrotransposon Ty1.

Authors:  D J Garfinkel; A M Hedge; S D Youngren; T D Copeland
Journal:  J Virol       Date:  1991-09       Impact factor: 5.103

9.  Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings.

Authors:  Cécile Neuvéglise; Fabienne Chalvet; Patrick Wincker; Claude Gaillardin; Serge Casaregola
Journal:  Eukaryot Cell       Date:  2005-03

10.  Ty3 transposes in mating populations of yeast: a novel transposition assay for Ty3.

Authors:  P T Kinsey; S B Sandmeyer
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

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