Literature DB >> 2813373

Glycine tRNA mutants with normal anticodon loop size cause -1 frameshifting.

D J O'Mahony1, B H Mims, S Thompson, E J Murgola, J F Atkins.   

Abstract

Mutations in the acceptor stem, the 5-methyluridine-pseudouridine-cytidine (TFC) arm, and the anticodon of Salmonella tRNA2Gly can cause -1 frameshifting. The potential for standard base pairing between acceptor stem positions 1 and 72 is disrupted in the mutant sufS627. This disruption may interfere with the interaction of the tRNA with elongation factor-Tu.GTP or an as-yet-unspecified domain of the ribosome. The potential for standard base pairing in part of the TFC stem is disrupted in mutant sufS625. The nearly universal C-61 base of the TFC stem is altered in mutant sufS617, and the TFC loop is extended in mutant sufS605. These changes are expected to interfere with the stability of the TFC loop and its interaction with the D arm. The mutation in mutant sufS605, and possibly other mutants, alters nucleoside modification in the D arm. Three mutants, sufS601, sufS607, and sufS609, have a cytidine substituted for the modified uridine at position 34, the first anticodon position. None of the alterations grossly disrupts in-frame triplet decoding by the mutant tRNAs. The results show that -1 frameshifting in vivo can be caused by tRNAs with normal anticodon loop size and suggest that alternative conformational states of the mutant tRNAs may allow them to read a codon in frame or to shift reading frame.

Entities:  

Mesh:

Substances:

Year:  1989        PMID: 2813373      PMCID: PMC298196          DOI: 10.1073/pnas.86.20.7979

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  Base pairing and fidelity in codon-anticodon interaction.

Authors:  M D Topal; J R Fresco
Journal:  Nature       Date:  1976-09-23       Impact factor: 49.962

2.  Importance of conserved residues for the conformation of the T-loop in tRNAs.

Authors:  P Romby; P Carbon; E Westhof; C Ehresmann; J P Ebel; B Ehresmann; R Giegé
Journal:  J Biomol Struct Dyn       Date:  1987-12

3.  Rapid print-readout technique for sequencing of RNA's containing modified nucleotides.

Authors:  R C Gupta; K Randerath
Journal:  Nucleic Acids Res       Date:  1979-08-10       Impact factor: 16.971

4.  Overlapping genes in RNA phage: a new protein implicated in lysis.

Authors:  M N Beremand; T Blumenthal
Journal:  Cell       Date:  1979-10       Impact factor: 41.582

5.  The role of the minor base N4-acetylcytidine in the function of the Escherichia coli noninitiator methionine transfer RNA.

Authors:  L Stern; L H Schulman
Journal:  J Biol Chem       Date:  1978-09-10       Impact factor: 5.157

6.  Use of purified isoacceptor tRNAs for the study of codon-anticodon recognition in vitro with sequenced natural messenger RNA.

Authors:  E Goldman; G W Hatfield
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

7.  Coding properties of an ochre-suppressing derivative of Escherichia coli tRNAITyr.

Authors:  S I Feinstein; S Altman
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

8.  The nucleotide sequence of the GGG-specific glycine transfer ribonucleic acid of Escherichia coli and of Salmonella typhimurium.

Authors:  C W Hill; G Combriato; W Steinhart; D L Riddle; J Carbon
Journal:  J Biol Chem       Date:  1973-06-25       Impact factor: 5.157

9.  The structural basis for the resistance of Escherichia coli formylmethionyl transfer ribonucleic acid to cleavage by Escherichia coli peptidyl transfer ribonucleic acid hydrolase.

Authors:  L H Schulman; H Pelka
Journal:  J Biol Chem       Date:  1975-01-25       Impact factor: 5.157

10.  Variations among glyV-derived glycine tRNA suppressors of glutamic acid codons.

Authors:  E J Murgola; N E Prather; K H Hadley
Journal:  J Bacteriol       Date:  1978-06       Impact factor: 3.490

View more
  15 in total

Review 1.  How translational accuracy influences reading frame maintenance.

Authors:  P J Farabaugh; G R Björk
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

2.  Mutations which alter the elbow region of tRNA2Gly reduce T4 gene 60 translational bypassing efficiency.

Authors:  A J Herr; J F Atkins; R F Gesteland
Journal:  EMBO J       Date:  1999-05-17       Impact factor: 11.598

Review 3.  Suppression and the code: beyond codons and anticodons.

Authors:  E J Murgola
Journal:  Experientia       Date:  1990-12-01

4.  A reduced level of charged tRNAArgmnm5UCU triggers the wild-type peptidyl-tRNA to frameshift.

Authors:  Ramune Leipuviene; Glenn R Björk
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

5.  Doublet translocation at GGA is mediated directly by mutant tRNA(2Gly).

Authors:  F T Pagel; T M Tuohy; J F Atkins; E J Murgola
Journal:  J Bacteriol       Date:  1992-06       Impact factor: 3.490

Review 6.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

7.  A minor arginine tRNA mutant limits translation preferentially of a protein dependent on the cognate codon.

Authors:  K S Chen; T C Peters; J R Walker
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

8.  A base substitution in the amino acid acceptor stem of tRNA(Lys) causes both misacylation and altered decoding.

Authors:  F T Pagel; E J Murgola
Journal:  Gene Expr       Date:  1996

9.  The Escherichia coli argU10(Ts) phenotype is caused by a reduction in the cellular level of the argU tRNA for the rare codons AGA and AGG.

Authors:  Kensaku Sakamoto; Satoshi Ishimaru; Takatsugu Kobayashi; James R Walker; Shigeyuki Yokoyama
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

10.  tRNA hopping: enhancement by an expanded anticodon.

Authors:  M O'Connor; R F Gesteland; J F Atkins
Journal:  EMBO J       Date:  1989-12-20       Impact factor: 11.598

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.