Literature DB >> 28416818

Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.

Ingrid E Christophersen1,2,3, Michiel Rienstra4, Carolina Roselli1,5,6, Xiaoyan Yin7,8, Bastiaan Geelhoed4, John Barnard9, Honghuang Lin7,8, Dan E Arking10, Albert V Smith11,12, Christine M Albert13,14, Mark Chaffin1, Nathan R Tucker1,2, Molong Li2, Derek Klarin1, Nathan A Bihlmeyer15, Siew-Kee Low16, Peter E Weeke17,18, Martina Müller-Nurasyid5,19,20, J Gustav Smith1,21, Jennifer A Brody22, Maartje N Niemeijer23, Marcus Dörr24,25, Stella Trompet26, Jennifer Huffman27, Stefan Gustafsson28, Claudia Schurmann29,30, Marcus E Kleber31, Leo-Pekka Lyytikäinen32, Ilkka Seppälä32, Rainer Malik33, Andrea R V R Horimoto34, Marco Perez35, Juha Sinisalo36, Stefanie Aeschbacher37,38, Sébastien Thériault39,40, Jie Yao41, Farid Radmanesh1,42, Stefan Weiss25,43, Alexander Teumer25,44, Seung Hoan Choi1, Lu-Chen Weng1,2, Sebastian Clauss2,19,20, Rajat Deo45, Daniel J Rader45, Svati H Shah46, Albert Sun46, Jemma C Hopewell47, Stephanie Debette48,49,50,51, Ganesh Chauhan48,49, Qiong Yang8, Bradford B Worrall52, Guillaume Paré39,40, Yoichiro Kamatani16, Yanick P Hagemeijer4, Niek Verweij4, Joylene E Siland4, Michiaki Kubo53, Jonathan D Smith9, David R Van Wagoner9, Joshua C Bis22, Siegfried Perz54, Bruce M Psaty22,55,56,57,58, Paul M Ridker13,14, Jared W Magnani7,59, Tamara B Harris60, Lenore J Launer60, M Benjamin Shoemaker17, Sandosh Padmanabhan61, Jeffrey Haessler62, Traci M Bartz22,63, Melanie Waldenberger20,54,64, Peter Lichtner65, Marina Arendt66, Jose E Krieger34, Mika Kähönen67, Lorenz Risch68,69, Alfredo J Mansur70, Annette Peters20,54,71, Blair H Smith72, Lars Lind73, Stuart A Scott74, Yingchang Lu29,30, Erwin B Bottinger29,75, Jussi Hernesniemi32,76, Cecilia M Lindgren77, Jorge A Wong78, Jie Huang79, Markku Eskola76, Andrew P Morris77,80, Ian Ford81, Alex P Reiner55,61, Graciela Delgado31, Lin Y Chen82, Yii-Der Ida Chen41, Roopinder K Sandhu83, Man Li84,85, Eric Boerwinkle86, Lewin Eisele66, Lars Lannfelt87, Natalia Rost1,88, Christopher D Anderson1,42, Kent D Taylor41, Archie Campbell89, Patrik K Magnusson90, David Porteous89, Lynne J Hocking91, Efthymia Vlachopoulou92, Nancy L Pedersen90, Kjell Nikus76, Marju Orho-Melander93, Anders Hamsten94, Jan Heeringa23, Joshua C Denny17, Jennifer Kriebel54,64,71, Dawood Darbar95, Christopher Newton-Cheh1,2, Christian Shaffer17, Peter W Macfarlane96, Stefanie Heilmann-Heimbach97,98, Peter Almgren93, Paul L Huang2, Nona Sotoodehnia56, Elsayed Z Soliman99, Andre G Uitterlinden100, Albert Hofman23, Oscar H Franco23, Uwe Völker25,43, Karl-Heinz Jöckel66, Moritz F Sinner19,20, Henry J Lin41, Xiuqing Guo41, Martin Dichgans33,101,102, Erik Ingelsson28,103, Charles Kooperberg62, Olle Melander104, Ruth J F Loos29,30,105, Jari Laurikka106, David Conen37,38,39, Jonathan Rosand1,42, Pim van der Harst4, Marja-Liisa Lokki92, Sekar Kathiresan1, Alexandre Pereira107,108, J Wouter Jukema26,109,110, Caroline Hayward27, Jerome I Rotter41,111, Winfried März112,113, Terho Lehtimäki32, Bruno H Stricker100,114, Mina K Chung9, Stephan B Felix24,25, Vilmundur Gudnason11,12, Alvaro Alonso115, Dan M Roden17, Stefan Kääb19,20, Daniel I Chasman1,13,116, Susan R Heckbert55,56,57, Emelia J Benjamin7,59,117, Toshihiro Tanaka118,119, Kathryn L Lunetta7,8, Steven A Lubitz1,2,120, Patrick T Ellinor1,2,120.   

Abstract

Atrial fibrillation affects more than 33 million people worldwide and increases the risk of stroke, heart failure, and death. Fourteen genetic loci have been associated with atrial fibrillation in European and Asian ancestry groups. To further define the genetic basis of atrial fibrillation, we performed large-scale, trans-ancestry meta-analyses of common and rare variant association studies. The genome-wide association studies (GWAS) included 17,931 individuals with atrial fibrillation and 115,142 referents; the exome-wide association studies (ExWAS) and rare variant association studies (RVAS) involved 22,346 cases and 132,086 referents. We identified 12 new genetic loci that exceeded genome-wide significance, implicating genes involved in cardiac electrical and structural remodeling. Our results nearly double the number of known genetic loci for atrial fibrillation, provide insights into the molecular basis of atrial fibrillation, and may facilitate the identification of new potential targets for drug discovery.

Entities:  

Mesh:

Year:  2017        PMID: 28416818      PMCID: PMC5585859          DOI: 10.1038/ng.3843

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   41.307


  37 in total

1.  Optimal tests for rare variant effects in sequencing association studies.

Authors:  Seunggeun Lee; Michael C Wu; Xihong Lin
Journal:  Biostatistics       Date:  2012-06-14       Impact factor: 5.899

2.  Large-scale whole-genome sequencing of the Icelandic population.

Authors:  Daniel F Gudbjartsson; Hannes Helgason; Sigurjon A Gudjonsson; Florian Zink; Asmundur Oddson; Arnaldur Gylfason; Soren Besenbacher; Gisli Magnusson; Bjarni V Halldorsson; Eirikur Hjartarson; Gunnar Th Sigurdsson; Simon N Stacey; Michael L Frigge; Hilma Holm; Jona Saemundsdottir; Hafdis Th Helgadottir; Hrefna Johannsdottir; Gunnlaugur Sigfusson; Gudmundur Thorgeirsson; Jon Th Sverrisson; Solveig Gretarsdottir; G Bragi Walters; Thorunn Rafnar; Bjarni Thjodleifsson; Einar S Bjornsson; Sigurdur Olafsson; Hildur Thorarinsdottir; Thora Steingrimsdottir; Thora S Gudmundsdottir; Asgeir Theodors; Jon G Jonasson; Asgeir Sigurdsson; Gyda Bjornsdottir; Jon J Jonsson; Olafur Thorarensen; Petur Ludvigsson; Hakon Gudbjartsson; Gudmundur I Eyjolfsson; Olof Sigurdardottir; Isleifur Olafsson; David O Arnar; Olafur Th Magnusson; Augustine Kong; Gisli Masson; Unnur Thorsteinsdottir; Agnar Helgason; Patrick Sulem; Kari Stefansson
Journal:  Nat Genet       Date:  2015-03-25       Impact factor: 38.330

Review 3.  2014 AHA/ACC/HRS guideline for the management of patients with atrial fibrillation: a report of the American College of Cardiology/American Heart Association Task Force on Practice Guidelines and the Heart Rhythm Society.

Authors:  Craig T January; L Samuel Wann; Joseph S Alpert; Hugh Calkins; Joaquin E Cigarroa; Joseph C Cleveland; Jamie B Conti; Patrick T Ellinor; Michael D Ezekowitz; Michael E Field; Katherine T Murray; Ralph L Sacco; William G Stevenson; Patrick J Tchou; Cynthia M Tracy; Clyde W Yancy
Journal:  J Am Coll Cardiol       Date:  2014-03-28       Impact factor: 24.094

4.  A rare variant in MYH6 is associated with high risk of sick sinus syndrome.

Authors:  Hilma Holm; Daniel F Gudbjartsson; Patrick Sulem; Gisli Masson; Hafdis Th Helgadottir; Carlo Zanon; Olafur Th Magnusson; Agnar Helgason; Jona Saemundsdottir; Arnaldur Gylfason; Hrafnhildur Stefansdottir; Solveig Gretarsdottir; Stefan E Matthiasson; Gu Mundur Thorgeirsson; Aslaug Jonasdottir; Asgeir Sigurdsson; Hreinn Stefansson; Thomas Werge; Thorunn Rafnar; Lambertus A Kiemeney; Babar Parvez; Raafia Muhammad; Dan M Roden; Dawood Darbar; Gudmar Thorleifsson; G Bragi Walters; Augustine Kong; Unnur Thorsteinsdottir; David O Arnar; Kari Stefansson
Journal:  Nat Genet       Date:  2011-03-06       Impact factor: 38.330

5.  Left atrial transcriptional changes associated with atrial fibrillation susceptibility and persistence.

Authors:  Amrish Deshmukh; John Barnard; Han Sun; David Newton; Laurie Castel; Gosta Pettersson; Douglas Johnston; Eric Roselli; A Marc Gillinov; Kenneth McCurry; Christine Moravec; Jonathan D Smith; David R Van Wagoner; Mina K Chung
Journal:  Circ Arrhythm Electrophysiol       Date:  2014-12-18

6.  Common variants in KCNN3 are associated with lone atrial fibrillation.

Authors:  Patrick T Ellinor; Kathryn L Lunetta; Nicole L Glazer; Arne Pfeufer; Alvaro Alonso; Mina K Chung; Moritz F Sinner; Paul I W de Bakker; Martina Mueller; Steven A Lubitz; Ervin Fox; Dawood Darbar; Nicholas L Smith; Jonathan D Smith; Renate B Schnabel; Elsayed Z Soliman; Kenneth M Rice; David R Van Wagoner; Britt-M Beckmann; Charlotte van Noord; Ke Wang; Georg B Ehret; Jerome I Rotter; Stanley L Hazen; Gerhard Steinbeck; Albert V Smith; Lenore J Launer; Tamara B Harris; Seiko Makino; Mari Nelis; David J Milan; Siegfried Perz; Tõnu Esko; Anna Köttgen; Susanne Moebus; Christopher Newton-Cheh; Man Li; Stefan Möhlenkamp; Thomas J Wang; W H Linda Kao; Ramachandran S Vasan; Markus M Nöthen; Calum A MacRae; Bruno H Ch Stricker; Albert Hofman; André G Uitterlinden; Daniel Levy; Eric Boerwinkle; Andres Metspalu; Eric J Topol; Aravinda Chakravarti; Vilmundur Gudnason; Bruce M Psaty; Dan M Roden; Thomas Meitinger; H-Erich Wichmann; Jacqueline C M Witteman; John Barnard; Dan E Arking; Emelia J Benjamin; Susan R Heckbert; Stefan Kääb
Journal:  Nat Genet       Date:  2010-02-21       Impact factor: 38.330

7.  Biological interpretation of genome-wide association studies using predicted gene functions.

Authors:  Tune H Pers; Juha M Karjalainen; Yingleong Chan; Harm-Jan Westra; Andrew R Wood; Jian Yang; Julian C Lui; Sailaja Vedantam; Stefan Gustafsson; Tonu Esko; Tim Frayling; Elizabeth K Speliotes; Michael Boehnke; Soumya Raychaudhuri; Rudolf S N Fehrmann; Joel N Hirschhorn; Lude Franke
Journal:  Nat Commun       Date:  2015-01-19       Impact factor: 14.919

8.  Genetic disruption of the sh3pxd2a gene reveals an essential role in mouse development and the existence of a novel isoform of tks5.

Authors:  Pilar Cejudo-Martin; Angela Yuen; Nicole Vlahovich; Peter Lock; Sara A Courtneidge; Begoña Díaz
Journal:  PLoS One       Date:  2014-09-26       Impact factor: 3.240

9.  GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Authors:  Eran Eden; Roy Navon; Israel Steinfeld; Doron Lipson; Zohar Yakhini
Journal:  BMC Bioinformatics       Date:  2009-02-03       Impact factor: 3.169

10.  Identification of additional risk loci for stroke and small vessel disease: a meta-analysis of genome-wide association studies.

Authors: 
Journal:  Lancet Neurol       Date:  2016-04-07       Impact factor: 44.182

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  116 in total

Review 1.  Genetics of Atrial Fibrillation in 2020: GWAS, Genome Sequencing, Polygenic Risk, and Beyond.

Authors:  Carolina Roselli; Michiel Rienstra; Patrick T Ellinor
Journal:  Circ Res       Date:  2020-06-18       Impact factor: 17.367

2.  Associations of Combined Genetic and Lifestyle Risks With Incident Cardiovascular Disease and Diabetes in the UK Biobank Study.

Authors:  M Abdullah Said; Niek Verweij; Pim van der Harst
Journal:  JAMA Cardiol       Date:  2018-08-01       Impact factor: 14.676

3.  Differentially expressed genes for atrial fibrillation identified by RNA sequencing from paired human left and right atrial appendages.

Authors:  Alison M Thomas; Claudia P Cabrera; Malcolm Finlay; Kulvinder Lall; Muriel Nobles; Richard J Schilling; Kristie Wood; Charles A Mein; Michael R Barnes; Patricia B Munroe; Andrew Tinker
Journal:  Physiol Genomics       Date:  2019-06-07       Impact factor: 3.107

4.  Germline versus somatic mutations in genetic atrial fibrillation.

Authors:  Mark McCauley; Dawood Darbar
Journal:  Heart Rhythm       Date:  2017-07-20       Impact factor: 6.343

5.  Genetic Susceptibility for Atrial Fibrillation in Patients Undergoing Atrial Fibrillation Ablation.

Authors:  M Benjamin Shoemaker; Daniela Husser; Carolina Roselli; Meelad Al Jazairi; Jonathan Chrispin; Michael Kühne; Benjamin Neumann; Stacey Knight; Han Sun; Sanghamitra Mohanty; Christian Shaffer; Sébastien Thériault; Lauren Lee Rinke; Joylene E Siland; Diane M Crawford; Laura Ueberham; Omeed Zardkoohi; Petra Büttner; Bastiaan Geelhoed; Steffen Blum; Stefanie Aeschbacher; Jonathan D Smith; David R Van Wagoner; Rebecca Freudling; Martina Müller-Nurasyid; Jay Montgomery; Zachary Yoneda; Quinn Wells; Tariq Issa; Peter Weeke; Victoria Jacobs; Isabelle C Van Gelder; Gerhard Hindricks; John Barnard; Hugh Calkins; Dawood Darbar; Greg Michaud; Stefan Kääb; Patrick Ellinor; Andrea Natale; Mina Chung; Saman Nazarian; Michael J Cutler; Moritz F Sinner; David Conen; Michiel Rienstra; Andreas Bollmann; Dan M Roden; Steven Lubitz
Journal:  Circ Arrhythm Electrophysiol       Date:  2020-02-14

6.  Monogenic and Polygenic Contributions to Atrial Fibrillation Risk: Results From a National Biobank.

Authors:  Seung Hoan Choi; Sean J Jurgens; Lu-Chen Weng; James P Pirruccello; Carolina Roselli; Mark Chaffin; Christina J-Y Lee; Amelia W Hall; Amit V Khera; Kathryn L Lunetta; Steven A Lubitz; Patrick T Ellinor
Journal:  Circ Res       Date:  2019-11-06       Impact factor: 17.367

Review 7.  Interplay between cardiac transcription factors and non-coding RNAs in predisposing to atrial fibrillation.

Authors:  Alexander T Mikhailov; Mario Torrado
Journal:  J Mol Med (Berl)       Date:  2018-05-12       Impact factor: 4.599

8.  Codon bias among synonymous rare variants is associated with Alzheimer's disease imaging biomarker.

Authors:  Jason E Miller; Manu K Shivakumar; Shannon L Risacher; Andrew J Saykin; Seunggeun Lee; Kwangsik Nho; Dokyoon Kim
Journal:  Pac Symp Biocomput       Date:  2018

9.  Genetic Control of Left Atrial Gene Expression Yields Insights into the Genetic Susceptibility for Atrial Fibrillation.

Authors:  Jeffrey Hsu; Shamone Gore-Panter; Gregory Tchou; Laurie Castel; Beth Lovano; Christine S Moravec; Gosta B Pettersson; Eric E Roselli; A Marc Gillinov; Kenneth R McCurry; Nicholas G Smedira; John Barnard; David R Van Wagoner; Mina K Chung; Jonathan D Smith
Journal:  Circ Genom Precis Med       Date:  2018-03

10.  Common and Rare Coding Genetic Variation Underlying the Electrocardiographic PR Interval.

Authors:  Honghuang Lin; Jessica van Setten; Albert V Smith; Nathan A Bihlmeyer; Helen R Warren; Jennifer A Brody; Farid Radmanesh; Leanne Hall; Niels Grarup; Martina Müller-Nurasyid; Thibaud Boutin; Niek Verweij; Henry J Lin; Ruifang Li-Gao; Marten E van den Berg; Jonathan Marten; Stefan Weiss; Bram P Prins; Jeffrey Haessler; Leo-Pekka Lyytikäinen; Hao Mei; Tamara B Harris; Lenore J Launer; Man Li; Alvaro Alonso; Elsayed Z Soliman; John M Connell; Paul L Huang; Lu-Chen Weng; Heather S Jameson; William Hucker; Alan Hanley; Nathan R Tucker; Yii-Der Ida Chen; Joshua C Bis; Kenneth M Rice; Colleen M Sitlani; Jan A Kors; Zhijun Xie; Chengping Wen; Jared W Magnani; Christopher P Nelson; Jørgen K Kanters; Moritz F Sinner; Konstantin Strauch; Annette Peters; Melanie Waldenberger; Thomas Meitinger; Jette Bork-Jensen; Oluf Pedersen; Allan Linneberg; Igor Rudan; Rudolf A de Boer; Peter van der Meer; Jie Yao; Xiuqing Guo; Kent D Taylor; Nona Sotoodehnia; Jerome I Rotter; Dennis O Mook-Kanamori; Stella Trompet; Fernando Rivadeneira; André Uitterlinden; Mark Eijgelsheim; Sandosh Padmanabhan; Blair H Smith; Henry Völzke; Stephan B Felix; Georg Homuth; Uwe Völker; Massimo Mangino; Timothy D Spector; Michiel L Bots; Marco Perez; Mika Kähönen; Olli T Raitakari; Vilmundur Gudnason; Dan E Arking; Patricia B Munroe; Bruce M Psaty; Cornelia M van Duijn; Emelia J Benjamin; Jonathan Rosand; Nilesh J Samani; Torben Hansen; Stefan Kääb; Ozren Polasek; Pim van der Harst; Susan R Heckbert; J Wouter Jukema; Bruno H Stricker; Caroline Hayward; Marcus Dörr; Yalda Jamshidi; Folkert W Asselbergs; Charles Kooperberg; Terho Lehtimäki; James G Wilson; Patrick T Ellinor; Steven A Lubitz; Aaron Isaacs
Journal:  Circ Genom Precis Med       Date:  2018-05
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