Literature DB >> 32820061

Structural basis of transcription-translation coupling.

Chengyuan Wang1, Vadim Molodtsov1, Emre Firlar2, Jason T Kaelber2, Gregor Blaha3, Min Su4, Richard H Ebright5.   

Abstract

In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the transcription factors NusG (which is thought to bridge RNAP and the ribosome) and NusA. Here, we report cryo-electron microscopy structures of Escherichia coli transcription-translation complexes (TTCs) containing different-length mRNA spacers between RNAP and the ribosome active-center P site. Structures of TTCs containing short spacers show a state incompatible with NusG bridging and NusA binding (TTC-A, previously termed "expressome"). Structures of TTCs containing longer spacers reveal a new state compatible with NusG bridging and NusA binding (TTC-B) and reveal how NusG bridges and NusA binds. We propose that TTC-B mediates NusG- and NusA-dependent transcription-translation coupling.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32820061      PMCID: PMC7566311          DOI: 10.1126/science.abb5317

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  49 in total

1.  Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals.

Authors:  I Artsimovitch; R Landick
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Structural aspects of messenger RNA reading frame maintenance by the ribosome.

Authors:  Lasse B Jenner; Natalia Demeshkina; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2010-04-18       Impact factor: 15.369

3.  Structures of the bacterial ribosome at 3.5 A resolution.

Authors:  Barbara S Schuwirth; Maria A Borovinskaya; Cathy W Hau; Wen Zhang; Antón Vila-Sanjurjo; James M Holton; Jamie H Doudna Cate
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

4.  Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

Authors:  E E Blatter; W Ross; H Tang; R L Gourse; R H Ebright
Journal:  Cell       Date:  1994-09-09       Impact factor: 41.582

5.  goCTF: Geometrically optimized CTF determination for single-particle cryo-EM.

Authors:  Min Su
Journal:  J Struct Biol       Date:  2018-11-26       Impact factor: 2.867

6.  Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1.

Authors:  Bertrand Beckert; Martin Turk; Andreas Czech; Otto Berninghausen; Roland Beckmann; Zoya Ignatova; Jürgen M Plitzko; Daniel N Wilson
Journal:  Nat Microbiol       Date:  2018-09-03       Impact factor: 17.745

7.  Co-overexpression of Escherichia coli RNA polymerase subunits allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions.

Authors:  Irina Artsimovitch; Vladimir Svetlov; Katsuhiko S Murakami; Robert Landick
Journal:  J Biol Chem       Date:  2003-01-02       Impact factor: 5.157

8.  Rebuilding the bridge between transcription and translation.

Authors:  Irina Artsimovitch
Journal:  Mol Microbiol       Date:  2018-04-27       Impact factor: 3.501

9.  Folding pathway of an Ig domain is conserved on and off the ribosome.

Authors:  Pengfei Tian; Annette Steward; Renuka Kudva; Ting Su; Patrick J Shilling; Adrian A Nickson; Jeffrey J Hollins; Roland Beckmann; Gunnar von Heijne; Jane Clarke; Robert B Best
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-09       Impact factor: 11.205

10.  Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.

Authors:  Dorothee Liebschner; Pavel V Afonine; Matthew L Baker; Gábor Bunkóczi; Vincent B Chen; Tristan I Croll; Bradley Hintze; Li Wei Hung; Swati Jain; Airlie J McCoy; Nigel W Moriarty; Robert D Oeffner; Billy K Poon; Michael G Prisant; Randy J Read; Jane S Richardson; David C Richardson; Massimo D Sammito; Oleg V Sobolev; Duncan H Stockwell; Thomas C Terwilliger; Alexandre G Urzhumtsev; Lizbeth L Videau; Christopher J Williams; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-10-02       Impact factor: 7.652

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  35 in total

1.  An in vitro Assay of mRNA 3' end Using the E. coli Cell-free Expression System.

Authors:  Monford Paul Abishek N; Heon M Lim
Journal:  Bio Protoc       Date:  2022-02-20

2.  Dynamic competition between a ligand and transcription factor NusA governs riboswitch-mediated transcription regulation.

Authors:  Adrien Chauvier; Pujan Ajmera; Rajeev Yadav; Nils G Walter
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

Review 3.  Bacterial transcription during growth arrest.

Authors:  Megan Bergkessel
Journal:  Transcription       Date:  2021-09-06

4.  Mapping functional regions of essential bacterial proteins with dominant-negative protein fragments.

Authors:  Andrew Savinov; Andres Fernandez; Stanley Fields
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-24       Impact factor: 12.779

5.  Transcription regulates ribosome hibernation.

Authors:  Heather A Feaga; Jonathan Dworkin
Journal:  Mol Microbiol       Date:  2021-06-21       Impact factor: 3.501

6.  A translational riboswitch coordinates nascent transcription-translation coupling.

Authors:  Surajit Chatterjee; Adrien Chauvier; Shiba S Dandpat; Irina Artsimovitch; Nils G Walter
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-20       Impact factor: 11.205

7.  The intricate relationship between transcription and translation.

Authors:  Michael W Webster; Albert Weixlbaumer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

Review 8.  How structural biology transformed studies of transcription regulation.

Authors:  Cynthia Wolberger
Journal:  J Biol Chem       Date:  2021-05-03       Impact factor: 5.157

9.  Preparation of E. coli RNA polymerase transcription elongation complexes by selective photoelution from magnetic beads.

Authors:  Eric J Strobel
Journal:  J Biol Chem       Date:  2021-05-21       Impact factor: 5.157

Review 10.  Composition of Transcription Machinery and Its Crosstalk with Nucleoid-Associated Proteins and Global Transcription Factors.

Authors:  Georgi Muskhelishvili; Patrick Sobetzko; Sanja Mehandziska; Andrew Travers
Journal:  Biomolecules       Date:  2021-06-22
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