Literature DB >> 20541509

Structure of the 100S ribosome in the hibernation stage revealed by electron cryomicroscopy.

Takayuki Kato1, Hideji Yoshida, Tomoko Miyata, Yasushi Maki, Akira Wada, Keiichi Namba.   

Abstract

In the stationary growth phase of bacteria, protein biosynthesis on ribosomes is suppressed, and the ribosomes are preserved in the cell by the formation of the 100S ribosome. The 100S ribosome is a dimer of the 70S ribosome and is formed by the binding of the ribosome modulation factor and the hibernation promoting factor. However, the binding mode between the two 70S ribosomes and the mechanism of complex formation are still poorly understood. Here, we report the structure of the 100S ribosome by electron cryomicroscopy and single-particle image analysis. The 100S ribosome purified from the cell in the stationary growth phase is composed of two transfer RNA-free 70S ribosomes, has two-fold symmetry, and is formed through interactions between their 30S subunits, where interactions between small subunit proteins, S2, S3 and S5, appear to be critical for the dimerization.

Mesh:

Year:  2010        PMID: 20541509     DOI: 10.1016/j.str.2010.02.017

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  30 in total

1.  YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli.

Authors:  Hideji Yoshida; Yasushi Maki; Shou Furuike; Akiko Sakai; Masami Ueta; Akira Wada
Journal:  J Bacteriol       Date:  2012-06-01       Impact factor: 3.490

2.  Architecture of a transcribing-translating expressome.

Authors:  R Kohler; R A Mooney; D J Mills; R Landick; P Cramer
Journal:  Science       Date:  2017-04-14       Impact factor: 47.728

3.  Characterization of hibernating ribosomes in mammalian cells.

Authors:  Dawid Krokowski; Francesca Gaccioli; Mithu Majumder; Michael R Mullins; Celvie L Yuan; Barbara Papadopoulou; William C Merrick; Anton A Komar; Derek Taylor; Maria Hatzoglou
Journal:  Cell Cycle       Date:  2011-08-15       Impact factor: 4.534

4.  Development, antibiotic production, and ribosome assembly in Streptomyces venezuelae are impacted by RNase J and RNase III deletion.

Authors:  Stephanie E Jones; Vivian Leong; Joaquin Ortega; Marie A Elliot
Journal:  J Bacteriol       Date:  2014-09-29       Impact factor: 3.490

5.  Initial bridges between two ribosomal subunits are formed within 9.4 milliseconds, as studied by time-resolved cryo-EM.

Authors:  Tanvir R Shaikh; Aymen S Yassin; Zonghuan Lu; David Barnard; Xing Meng; Toh-Ming Lu; Terence Wagenknecht; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

6.  Resuscitation of Pseudomonas aeruginosa from dormancy requires hibernation promoting factor (PA4463) for ribosome preservation.

Authors:  Tatsuya Akiyama; Kerry S Williamson; Robert Schaefer; Shawna Pratt; Connie B Chang; Michael J Franklin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-07       Impact factor: 11.205

7.  Survivor: Ribosome Edition.

Authors:  Ruben L Gonzalez
Journal:  EMBO J       Date:  2017-07-03       Impact factor: 11.598

8.  Ribosome Dimerization Protects the Small Subunit.

Authors:  Heather A Feaga; Mykhailo Kopylov; Jenny Kim Kim; Marko Jovanovic; Jonathan Dworkin
Journal:  J Bacteriol       Date:  2020-04-27       Impact factor: 3.490

9.  Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ.

Authors:  Julio O Ortiz; Florian Brandt; Valério R F Matias; Lau Sennels; Juri Rappsilber; Sjors H W Scheres; Matthias Eibauer; F Ulrich Hartl; Wolfgang Baumeister
Journal:  J Cell Biol       Date:  2010-08-23       Impact factor: 10.539

10.  Ribosome hibernation facilitates tolerance of stationary-phase bacteria to aminoglycosides.

Authors:  Susannah L McKay; Daniel A Portnoy
Journal:  Antimicrob Agents Chemother       Date:  2015-08-31       Impact factor: 5.191

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