Literature DB >> 28401295

The metagenomics worldwide research.

Jose Antonio Garrido-Cardenas1, Francisco Manzano-Agugliaro2.   

Abstract

Metagenomics is the technique, or set of techniques, whose main objective is to determine the microbial population that can be found in a determined environment, studied in the context of its community. For this, it uses the techniques of massive sequencing, or next generation sequencing, due to the difficulties presented by traditional techniques when trying to transfer all the microorganisms present in a given environment to the laboratory. Metagenomics is a newly created technique, which was born at the beginning of the twenty-first century, and since then the interest of the world scientific community in fields as diverse as medicine, biotechnology, agriculture or genetics has not left to grow. In this article, the authors make a historical review of the metagenomics, analyze and evaluate the different massive sequencing platforms used for metagenomic assays, review the current literature on this subject and advance future problems with which researchers who decide to go deeper in this field could find. In this way, the prior knowledge of the researcher will facilitate the approach of his research.

Keywords:  16S rRNA; Functional genomic; Massive sequencing; Metagenomics; Phylogeny

Mesh:

Substances:

Year:  2017        PMID: 28401295     DOI: 10.1007/s00294-017-0693-8

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  37 in total

1.  Zero-mode waveguides for single-molecule analysis at high concentrations.

Authors:  M J Levene; J Korlach; S W Turner; M Foquet; H G Craighead; W W Webb
Journal:  Science       Date:  2003-01-31       Impact factor: 47.728

Review 2.  Mapping the tree of life: progress and prospects.

Authors:  Norman R Pace
Journal:  Microbiol Mol Biol Rev       Date:  2009-12       Impact factor: 11.056

3.  Bacterial metabarcoding by 16S rRNA gene ion torrent amplicon sequencing.

Authors:  Elio Fantini; Giulio Gianese; Giovanni Giuliano; Alessia Fiore
Journal:  Methods Mol Biol       Date:  2015

Review 4.  Classification of metagenomic sequences: methods and challenges.

Authors:  Sharmila S Mande; Monzoorul Haque Mohammed; Tarini Shankar Ghosh
Journal:  Brief Bioinform       Date:  2012-09-08       Impact factor: 11.622

Review 5.  Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments.

Authors:  Elizabeth R Jerison; Michael M Desai
Journal:  Curr Opin Genet Dev       Date:  2015-09-14       Impact factor: 5.578

Review 6.  Prokaryotes: the unseen majority.

Authors:  W B Whitman; D C Coleman; W J Wiebe
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

Review 7.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

8.  Scalable metagenomic taxonomy classification using a reference genome database.

Authors:  Sasha K Ames; David A Hysom; Shea N Gardner; G Scott Lloyd; Maya B Gokhale; Jonathan E Allen
Journal:  Bioinformatics       Date:  2013-07-04       Impact factor: 6.937

9.  Gene-centric metagenomics analysis of feline intestinal microbiome using 454 junior pyrosequencing.

Authors:  Hein Min Tun; Manreetpal Singh Brar; Nina Khin; Li Jun; Raymond Kin-Hi Hui; Scot E Dowd; Frederick Chi-Ching Leung
Journal:  J Microbiol Methods       Date:  2012-01-12       Impact factor: 2.363

Review 10.  Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond.

Authors:  Satoshi Hiraoka; Ching-Chia Yang; Wataru Iwasaki
Journal:  Microbes Environ       Date:  2016-07-05       Impact factor: 2.912

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  17 in total

1.  MSC: a metagenomic sequence classification algorithm.

Authors:  Subrata Saha; Jethro Johnson; Soumitra Pal; George M Weinstock; Sanguthevar Rajasekaran
Journal:  Bioinformatics       Date:  2019-09-01       Impact factor: 6.937

2.  Mining Marine Metagenomes Revealed a Quorum-Quenching Lactonase with Improved Biochemical Properties That Inhibits the Food Spoilage Bacterium Pseudomonas fluorescens.

Authors:  Rami Haramati; Shlomit Dor; David Gurevich; Doron Levy; Dekel Freund; Giora Rytwo; Itai Sharon; Livnat Afriat-Jurnou
Journal:  Appl Environ Microbiol       Date:  2021-12-15       Impact factor: 5.005

3.  Metagenomic Characterization of Bacterial Communities in Drinking Water Supply System of a Mega City.

Authors:  Faizan Saleem; Atif Mustafa; Junaid Ahmed Kori; Muhammad Saad Hussain; M Kamran Azim
Journal:  Microb Ecol       Date:  2018-04-24       Impact factor: 4.552

Review 4.  DNA Damage Repair System in Plants: A Worldwide Research Update.

Authors:  Estela Gimenez; Francisco Manzano-Agugliaro
Journal:  Genes (Basel)       Date:  2017-10-30       Impact factor: 4.096

5.  Bacteriophages as New Human Viral Pathogens.

Authors:  George Tetz; Victor Tetz
Journal:  Microorganisms       Date:  2018-06-16

6.  Comparison of Database Search Methods for the Detection of Legionella pneumophila in Water Samples Using Metagenomic Analysis.

Authors:  Jednipit Borthong; Ryosuke Omori; Chihiro Sugimoto; Orasa Suthienkul; Ryo Nakao; Kimihito Ito
Journal:  Front Microbiol       Date:  2018-06-19       Impact factor: 5.640

Review 7.  A brief review of bioluminescent systems (2019).

Authors:  Aubin Fleiss; Karen S Sarkisyan
Journal:  Curr Genet       Date:  2019-03-08       Impact factor: 3.886

8.  Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples.

Authors:  Carlos S Casimiro-Soriguer; Carlos Loucera; Javier Perez Florido; Daniel López-López; Joaquin Dopazo
Journal:  Biol Direct       Date:  2019-08-20       Impact factor: 4.540

9.  Milk microbiome diversity and bacterial group prevalence in a comparison between healthy Holstein Friesian and Rendena cows.

Authors:  Paola Cremonesi; Camilla Ceccarani; Giulio Curone; Marco Severgnini; Claudia Pollera; Valerio Bronzo; Federica Riva; Maria Filippa Addis; Joel Filipe; Massimo Amadori; Erminio Trevisi; Daniele Vigo; Paolo Moroni; Bianca Castiglioni
Journal:  PLoS One       Date:  2018-10-24       Impact factor: 3.240

Review 10.  Trends in plant research using molecular markers.

Authors:  Jose Antonio Garrido-Cardenas; Concepción Mesa-Valle; Francisco Manzano-Agugliaro
Journal:  Planta       Date:  2017-12-14       Impact factor: 4.116

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