Literature DB >> 25343859

Bacterial metabarcoding by 16S rRNA gene ion torrent amplicon sequencing.

Elio Fantini1, Giulio Gianese, Giovanni Giuliano, Alessia Fiore.   

Abstract

Ion Torrent is a next generation sequencing technology based on the detection of hydrogen ions produced during DNA chain elongation; this technology allows analyzing and characterizing genomes, genes, and species. Here, we describe an Ion Torrent procedure applied to the metagenomic analysis of 16S rRNA gene amplicons to study the bacterial diversity in food and environmental samples.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25343859     DOI: 10.1007/978-1-4939-1720-4_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

Review 1.  The metagenomics worldwide research.

Authors:  Jose Antonio Garrido-Cardenas; Francisco Manzano-Agugliaro
Journal:  Curr Genet       Date:  2017-04-11       Impact factor: 3.886

Review 2.  A Robust Framework for Microbial Archaeology.

Authors:  Christina Warinner; Alexander Herbig; Allison Mann; James A Fellows Yates; Clemens L Weiß; Hernán A Burbano; Ludovic Orlando; Johannes Krause
Journal:  Annu Rev Genomics Hum Genet       Date:  2017-04-26       Impact factor: 8.929

3.  Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on coxI DNA barcode.

Authors:  Bachir Balech; Anna Sandionigi; Caterina Manzari; Emiliano Trucchi; Apollonia Tullo; Flavio Licciulli; Giorgio Grillo; Elisabetta Sbisà; Stefano De Felici; Cecilia Saccone; Anna Maria D'Erchia; Donatella Cesaroni; Maurizio Casiraghi; Saverio Vicario
Journal:  PeerJ       Date:  2018-06-13       Impact factor: 2.984

4.  Design of targeted primers based on 16S rRNA sequences in meta-transcriptomic datasets and identification of a novel taxonomic group in the Asgard archaea.

Authors:  Ru-Yi Zhang; Bin Zou; Yong-Wei Yan; Che Ok Jeon; Meng Li; Mingwei Cai; Zhe-Xue Quan
Journal:  BMC Microbiol       Date:  2020-02-03       Impact factor: 3.605

5.  Next Generation Semiconductor Based Sequencing of the Donkey (Equus asinus) Genome Provided Comparative Sequence Data against the Horse Genome and a Few Millions of Single Nucleotide Polymorphisms.

Authors:  Francesca Bertolini; Concetta Scimone; Claudia Geraci; Giuseppina Schiavo; Valerio Joe Utzeri; Vincenzo Chiofalo; Luca Fontanesi
Journal:  PLoS One       Date:  2015-07-07       Impact factor: 3.240

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.