Literature DB >> 29243155

Trends in plant research using molecular markers.

Jose Antonio Garrido-Cardenas1, Concepción Mesa-Valle2, Francisco Manzano-Agugliaro3.   

Abstract

MAIN
CONCLUSION: A deep bibliometric analysis has been carried out, obtaining valuable parameters that facilitate the understanding around the research in plant using molecular markers. The evolution of the improvement in the field of agronomy is fundamental for its adaptation to the new exigencies that the current world context raises. In addition, within these improvements, this article focuses on those related to the biotechnology sector. More specifically, the use of DNA markers that allow the researcher to know the set of genes associated with a particular quantitative trait or QTL. The use of molecular markers is widely extended, including: restriction fragment length polymorphism, random-amplified polymorphic DNA, amplified fragment length polymorphism, microsatellites, and single-nucleotide polymorphisms. In addition to classical methodology, new approaches based on the next generation sequencing are proving to be fundamental. In this article, a historical review of the molecular markers traditionally used in plants, since its birth and how the new molecular tools facilitate the work of plant breeders is carried out. The evolution of the most studied cultures from the point of view of molecular markers is also reviewed and other parameters whose prior knowledge can facilitate the approach of researchers to this field of research are analyzed. The bibliometric analysis of molecular markers in plants shows that top five countries in this research are: US, China, India, France, and Germany, and from 2013, this research is led by China. On the other hand, the basic research using Arabidopsis is deeper in France and Germany, while other countries focused its efforts in their main crops as the US for wheat or maize, while China and India for wheat and rice.

Entities:  

Keywords:  AFLP; Microsatellite; QTL; RAPD; RFLP; SNP

Mesh:

Substances:

Year:  2017        PMID: 29243155     DOI: 10.1007/s00425-017-2829-y

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  44 in total

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Journal:  J Comput Biol       Date:  2000       Impact factor: 1.479

2.  AFLP technology for DNA fingerprinting.

Authors:  Marnik Vuylsteke; Johan D Peleman; Michiel J T van Eijk
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

4.  Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.

Authors:  E S Lander; D Botstein
Journal:  Genetics       Date:  1989-01       Impact factor: 4.562

Review 5.  Large SNP arrays for genotyping in crop plants.

Authors:  Martin W Ganal; Andreas Polley; Eva-Maria Graner; Joerg Plieske; Ralf Wieseke; Hartmut Luerssen; Gregor Durstewitz
Journal:  J Biosci       Date:  2012-11       Impact factor: 1.826

6.  Rapid identification of angulata leaf mutations using next-generation sequencing.

Authors:  Eduardo Mateo-Bonmatí; Rubén Casanova-Sáez; Héctor Candela; José Luis Micol
Journal:  Planta       Date:  2014-08-08       Impact factor: 4.116

Review 7.  Coming of age: ten years of next-generation sequencing technologies.

Authors:  Sara Goodwin; John D McPherson; W Richard McCombie
Journal:  Nat Rev Genet       Date:  2016-05-17       Impact factor: 53.242

8.  The development and evaluation of consensus chloroplast primer pairs that possess highly variable sequence regions in a diverse array of plant taxa.

Authors:  Sang-Min Chung; Jack E Staub
Journal:  Theor Appl Genet       Date:  2003-06-25       Impact factor: 5.699

Review 9.  DNA Sequencing Sensors: An Overview.

Authors:  Jose Antonio Garrido-Cardenas; Federico Garcia-Maroto; Jose Antonio Alvarez-Bermejo; Francisco Manzano-Agugliaro
Journal:  Sensors (Basel)       Date:  2017-03-14       Impact factor: 3.576

Review 10.  Genome-editing technologies and their potential application in horticultural crop breeding.

Authors:  Jin-Song Xiong; Jing Ding; Yi Li
Journal:  Hortic Res       Date:  2015-05-13       Impact factor: 6.793

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  25 in total

Review 1.  Miniature inverted-repeat transposable elements (MITEs), derived insertional polymorphism as a tool of marker systems for molecular plant breeding.

Authors:  B Nandini
Journal:  Mol Biol Rep       Date:  2020-03-11       Impact factor: 2.316

2.  The newly developed single nucleotide polymorphism (SNP) markers for a potentially medicinal plant, Crepidiastrum denticulatum (Asteraceae), inferred from complete chloroplast genome data.

Authors:  Hoang Dang Khoa Do; Joonhyung Jung; JongYoung Hyun; Seok Jeong Yoon; Chaejin Lim; Keedon Park; Joo-Hwan Kim
Journal:  Mol Biol Rep       Date:  2019-04-12       Impact factor: 2.316

3.  Evaluation of genetic diversity by morphological, biochemical and molecular markers in sour cherry genotypes.

Authors:  Mehmet Yaman
Journal:  Mol Biol Rep       Date:  2021-11-24       Impact factor: 2.742

4.  Development of introgression lines in high yielding, semi-dwarf genetic backgrounds to enable improvement of modern rice varieties for tolerance to multiple abiotic stresses free from undesirable linkage drag.

Authors:  Arvind Kumar; Nitika Sandhu; Challa Venkateshwarlu; Rahul Priyadarshi; Shailesh Yadav; Ratna Rani Majumder; Vikas Kumar Singh
Journal:  Sci Rep       Date:  2020-08-04       Impact factor: 4.379

5.  A high-density SNP-based linkage map using genotyping-by-sequencing and its utilization for improved genome assembly of chickpea (Cicer arietinum L.).

Authors:  Rashmi Gaur; Subodh Verma; Seema Pradhan; Heena Ambreen; Sabhyata Bhatia
Journal:  Funct Integr Genomics       Date:  2020-08-27       Impact factor: 3.410

6.  Transferability and characterization of microsatellite markers from Byrsonima cydoniifolia A. Juss. (MALPIGHIACEAE) in seven related taxa from Cerrado biome reveal genetic relationships.

Authors:  Vanessa Bernardes; Devanir M Murakami; Nair Bizão; Tamara N Souza; Marcos J da Silva; Mariana P C Telles
Journal:  Mol Biol Rep       Date:  2021-05-20       Impact factor: 2.316

7.  Detection of Reproducible Major Effect QTL for Petal Traits in Garden Roses.

Authors:  Dietmar Schulz; Marcus Linde; Thomas Debener
Journal:  Plants (Basel)       Date:  2021-04-29

8.  Identification of drought tolerant mechanisms in a drought-tolerant maize mutant based on physiological, biochemical and transcriptomic analyses.

Authors:  Qinbin Zhang; Hui Liu; Xiaolin Wu; Wei Wang
Journal:  BMC Plant Biol       Date:  2020-07-03       Impact factor: 4.215

9.  Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants.

Authors:  Xiaoming Song; Qihang Yang; Yun Bai; Ke Gong; Tong Wu; Tong Yu; Qiaoying Pei; Weike Duan; Zhinan Huang; Zhiyuan Wang; Zhuo Liu; Xi Kang; Wei Zhao; Xiao Ma
Journal:  Hortic Res       Date:  2021-06-01       Impact factor: 6.793

10.  Genome-Wide Association Study and Selection Signatures Detect Genomic Regions Associated with Seed Yield and Oil Quality in Flax.

Authors:  Frank M You; Jin Xiao; Pingchuan Li; Zhen Yao; Gaofeng Jia; Liqiang He; Santosh Kumar; Braulio Soto-Cerda; Scott D Duguid; Helen M Booker; Khalid Y Rashid; Sylvie Cloutier
Journal:  Int J Mol Sci       Date:  2018-08-06       Impact factor: 5.923

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