Literature DB >> 28396388

Altering the allosteric pathway in IGPS suppresses millisecond motions and catalytic activity.

George P Lisi1, Kyle W East1, Victor S Batista1, J Patrick Loria2,3.   

Abstract

Imidazole glycerol phosphate synthase (IGPS) is a V-type allosteric enzyme, meaning that its catalytic rate is critically dependent on activation by its allosteric ligand, N'-[(5'-phosphoribulosyl)formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR). The allosteric mechanism of IGPS is reliant on millisecond conformational motions for efficient catalysis. We engineered four mutants of IGPS designed to disrupt millisecond motions and allosteric coupling to identify regions that are critical to IGPS function. Multiple-quantum Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion experiments and NMR chemical shift titrations reveal diminished enzyme flexibility and a reshaping of the allosteric connectivity in each mutant construct, respectively. The functional relevance of the observed motional quenching is confirmed by significant reductions in glutaminase kinetic activity and allosteric ligand binding affinity. This work presents relevant conclusions toward the control of protein allostery and design of unique allosteric sites for potential enzyme inhibitors with regulatory or therapeutic benefit.

Entities:  

Keywords:  NMR; allostery; community networks; millisecond motions

Mesh:

Substances:

Year:  2017        PMID: 28396388      PMCID: PMC5410785          DOI: 10.1073/pnas.1700448114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Allosteric pathways in imidazole glycerol phosphate synthase.

Authors:  Ivan Rivalta; Mohammad M Sultan; Ning-Shiuan Lee; Gregory A Manley; J Patrick Loria; Victor S Batista
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-14       Impact factor: 11.205

2.  Dysfunctional conformational dynamics of protein kinase A induced by a lethal mutant of phospholamban hinder phosphorylation.

Authors:  Jonggul Kim; Larry R Masterson; Alessandro Cembran; Raffaello Verardi; Lei Shi; Jiali Gao; Susan S Taylor; Gianluigi Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

3.  Catalysis uncoupling in a glutamine amidotransferase bienzyme by unblocking the glutaminase active site.

Authors:  Felix List; M Cristina Vega; Adelia Razeto; Michaela C Häger; Reinhard Sterner; Matthias Wilmanns
Journal:  Chem Biol       Date:  2012-12-21

4.  1H NMR study on the binding of Pin1 Trp-Trp domain with phosphothreonine peptides.

Authors:  R Wintjens; J M Wieruszeski; H Drobecq; P Rousselot-Pailley; L Buée; G Lippens; I Landrieu
Journal:  J Biol Chem       Date:  2001-04-19       Impact factor: 5.157

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

7.  Imidazole glycerol phosphate synthase: the glutamine amidotransferase in histidine biosynthesis.

Authors:  T J Klem; V J Davisson
Journal:  Biochemistry       Date:  1993-05-18       Impact factor: 3.162

8.  Solution NMR and computational methods for understanding protein allostery.

Authors:  Gregory Manley; Ivan Rivalta; J Patrick Loria
Journal:  J Phys Chem B       Date:  2013-03-12       Impact factor: 2.991

9.  Surface sites for engineering allosteric control in proteins.

Authors:  Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

10.  Hidden dynamic allostery in a PDZ domain.

Authors:  Chad M Petit; Jun Zhang; Paul J Sapienza; Ernesto J Fuentes; Andrew L Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-14       Impact factor: 11.205

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  24 in total

1.  Allosteric Control of Enzyme Activity: From Ancient Origins to Recent Gene-Editing Technologies.

Authors:  Krystle Reiss; Victor S Batista; J Patrick Loria
Journal:  Biochemistry       Date:  2020-04-23       Impact factor: 3.162

2.  Functional Role of Solvent Entropy and Conformational Entropy of Metal Binding in a Dynamically Driven Allosteric System.

Authors:  Daiana A Capdevila; Katherine A Edmonds; Gregory C Campanello; Hongwei Wu; Giovanni Gonzalez-Gutierrez; David P Giedroc
Journal:  J Am Chem Soc       Date:  2018-07-16       Impact factor: 15.419

3.  Eigenvector centrality for characterization of protein allosteric pathways.

Authors:  Christian F A Negre; Uriel N Morzan; Heidi P Hendrickson; Rhitankar Pal; George P Lisi; J Patrick Loria; Ivan Rivalta; Junming Ho; Victor S Batista
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-10       Impact factor: 11.205

4.  Community Network Analysis of Allosteric Proteins.

Authors:  Ivan Rivalta; Victor S Batista
Journal:  Methods Mol Biol       Date:  2021

5.  Exploring Allosteric Pathways of a V-Type Enzyme with Dynamical Perturbation Networks.

Authors:  Aria Gheeraert; Lorenza Pacini; Victor S Batista; Laurent Vuillon; Claire Lesieur; Ivan Rivalta
Journal:  J Phys Chem B       Date:  2019-04-15       Impact factor: 2.991

Review 6.  NMR and computational methods for molecular resolution of allosteric pathways in enzyme complexes.

Authors:  Kyle W East; Erin Skeens; Jennifer Y Cui; Helen B Belato; Brandon Mitchell; Rohaine Hsu; Victor S Batista; Giulia Palermo; George P Lisi
Journal:  Biophys Rev       Date:  2019-12-14

Review 7.  Engineered control of enzyme structural dynamics and function.

Authors:  David D Boehr; Rebecca N D'Amico; Kathleen F O'Rourke
Journal:  Protein Sci       Date:  2018-02-16       Impact factor: 6.725

8.  Dynamic activation and regulation of the mitogen-activated protein kinase p38.

Authors:  Ganesan Senthil Kumar; Michael W Clarkson; Micha B A Kunze; Daniele Granata; A Joshua Wand; Kresten Lindorff-Larsen; Rebecca Page; Wolfgang Peti
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

9.  Light Regulation of Enzyme Allostery through Photo-responsive Unnatural Amino Acids.

Authors:  Andrea C Kneuttinger; Kristina Straub; Philipp Bittner; Nadja A Simeth; Astrid Bruckmann; Florian Busch; Chitra Rajendran; Enrico Hupfeld; Vicki H Wysocki; Dominik Horinek; Burkhard König; Rainer Merkl; Reinhard Sterner
Journal:  Cell Chem Biol       Date:  2019-09-05       Impact factor: 8.116

10.  Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics.

Authors:  Kyle W East; Jocelyn C Newton; Uriel N Morzan; Yogesh B Narkhede; Atanu Acharya; Erin Skeens; Gerwald Jogl; Victor S Batista; Giulia Palermo; George P Lisi
Journal:  J Am Chem Soc       Date:  2020-01-09       Impact factor: 15.419

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