Literature DB >> 28394885

Mechanistic insights into energy conservation by flavin-based electron bifurcation.

Carolyn E Lubner1, David P Jennings2, David W Mulder1, Gerrit J Schut3, Oleg A Zadvornyy4, John P Hoben5, Monika Tokmina-Lukaszewska4, Luke Berry4, Diep M Nguyen3, Gina L Lipscomb3, Brian Bothner4, Anne K Jones2, Anne-Frances Miller5, Paul W King1, Michael W W Adams3, John W Peters4,6.   

Abstract

The recently realized biochemical phenomenon of energy conservation through electron bifurcation provides biology with an elegant means to maximize utilization of metabolic energy. The mechanism of coordinated coupling of exergonic and endergonic oxidation-reduction reactions by a single enzyme complex has been elucidated through optical and paramagnetic spectroscopic studies revealing unprecedented features. Pairs of electrons are bifurcated over more than 1 volt of electrochemical potential by generating a low-potential, highly energetic, unstable flavin semiquinone and directing electron flow to an iron-sulfur cluster with a highly negative potential to overcome the barrier of the endergonic half reaction. The unprecedented range of thermodynamic driving force that is generated by flavin-based electron bifurcation accounts for unique chemical reactions that are catalyzed by these enzymes.

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Year:  2017        PMID: 28394885      PMCID: PMC7646311          DOI: 10.1038/nchembio.2348

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  44 in total

1.  Redox bifurcations: mechanisms and importance to life now, and at its origin: a widespread means of energy conversion in biology unfolds….

Authors:  Wolfgang Nitschke; Michael J Russell
Journal:  Bioessays       Date:  2011-11-02       Impact factor: 4.345

2.  Marcus treatment of endergonic reactions: a commentary.

Authors:  Antony R Crofts; Stuart Rose
Journal:  Biochim Biophys Acta       Date:  2007-07-06

3.  Reduction of ferredoxin or oxygen by flavin-based electron bifurcation in Megasphaera elsdenii.

Authors:  Nilanjan P Chowdhury; Jörg Kahnt; Wolfgang Buckel
Journal:  FEBS J       Date:  2015-05-18       Impact factor: 5.542

4.  Semi-continuum electrostatic calculations of redox potentials in photosystem I.

Authors:  Vasily V Ptushenko; Dmitry A Cherepanov; Lev I Krishtalik; Alexey Yu Semenov
Journal:  Photosynth Res       Date:  2008-05-16       Impact factor: 3.573

5.  NADP+ reduction with reduced ferredoxin and NADP+ reduction with NADH are coupled via an electron-bifurcating enzyme complex in Clostridium kluyveri.

Authors:  Shuning Wang; Haiyan Huang; Johanna Moll; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2010-07-30       Impact factor: 3.490

Review 6.  Electron bifurcation.

Authors:  John W Peters; Anne-Frances Miller; Anne K Jones; Paul W King; Michael Ww Adams
Journal:  Curr Opin Chem Biol       Date:  2016-03-23       Impact factor: 8.822

7.  Reduction of Flavodoxin by Electron Bifurcation and Sodium Ion-dependent Reoxidation by NAD+ Catalyzed by Ferredoxin-NAD+ Reductase (Rnf).

Authors:  Nilanjan Pal Chowdhury; Katharina Klomann; Andreas Seubert; Wolfgang Buckel
Journal:  J Biol Chem       Date:  2016-04-05       Impact factor: 5.157

8.  Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard.

Authors:  Thomas C Terwilliger; Ralf W Grosse-Kunstleve; Pavel V Afonine; Nigel W Moriarty; Peter H Zwart; Li Wei Hung; Randy J Read; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05

9.  PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.

Authors:  Alper Baspinar; Engin Cukuroglu; Ruth Nussinov; Ozlem Keskin; Attila Gursoy
Journal:  Nucleic Acids Res       Date:  2014-05-14       Impact factor: 16.971

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  36 in total

1.  Equilibrium and ultrafast kinetic studies manipulating electron transfer: A short-lived flavin semiquinone is not sufficient for electron bifurcation.

Authors:  John P Hoben; Carolyn E Lubner; Michael W Ratzloff; Gerrit J Schut; Diep M N Nguyen; Karl W Hempel; Michael W W Adams; Paul W King; Anne-Frances Miller
Journal:  J Biol Chem       Date:  2017-06-14       Impact factor: 5.157

2.  The catalytic mechanism of electron-bifurcating electron transfer flavoproteins (ETFs) involves an intermediary complex with NAD<sup/>.

Authors:  Gerrit J Schut; Nishya Mohamed-Raseek; Monika Tokmina-Lukaszewska; David W Mulder; Diep M N Nguyen; Gina L Lipscomb; John P Hoben; Angela Patterson; Carolyn E Lubner; Paul W King; John W Peters; Brian Bothner; Anne-Frances Miller; Michael W W Adams
Journal:  J Biol Chem       Date:  2018-12-19       Impact factor: 5.157

3.  Two functionally distinct NADP+-dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus.

Authors:  Diep M N Nguyen; Gerrit J Schut; Oleg A Zadvornyy; Monika Tokmina-Lukaszewska; Saroj Poudel; Gina L Lipscomb; Leslie A Adams; Jessica T Dinsmore; William J Nixon; Eric S Boyd; Brian Bothner; John W Peters; Michael W W Adams
Journal:  J Biol Chem       Date:  2017-07-13       Impact factor: 5.157

4.  The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis.

Authors:  Rhesa N Ledbetter; Amaya M Garcia Costas; Carolyn E Lubner; David W Mulder; Monika Tokmina-Lukaszewska; Jacob H Artz; Angela Patterson; Timothy S Magnuson; Zackary J Jay; H Diessel Duan; Jacquelyn Miller; Mary H Plunkett; John P Hoben; Brett M Barney; Ross P Carlson; Anne-Frances Miller; Brian Bothner; Paul W King; John W Peters; Lance C Seefeldt
Journal:  Biochemistry       Date:  2017-08-03       Impact factor: 3.162

5.  Identification of a Formate-Dependent Uric Acid Degradation Pathway in Escherichia coli.

Authors:  Yumi Iwadate; Jun-Ichi Kato
Journal:  J Bacteriol       Date:  2019-05-08       Impact factor: 3.490

6.  Cryoelectron microscopy structure and mechanism of the membrane-associated electron-bifurcating flavoprotein Fix/EtfABCX.

Authors:  Xiang Feng; Gerrit J Schut; Gina L Lipscomb; Huilin Li; Michael W W Adams
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

Review 7.  Methane on Mars and Habitability: Challenges and Responses.

Authors:  Yuk L Yung; Pin Chen; Kenneth Nealson; Sushil Atreya; Patrick Beckett; Jennifer G Blank; Bethany Ehlmann; John Eiler; Giuseppe Etiope; James G Ferry; Francois Forget; Peter Gao; Renyu Hu; Armin Kleinböhl; Ronald Klusman; Franck Lefèvre; Charles Miller; Michael Mischna; Michael Mumma; Sally Newman; Dorothy Oehler; Mitchio Okumura; Ronald Oremland; Victoria Orphan; Radu Popa; Michael Russell; Linhan Shen; Barbara Sherwood Lollar; Robert Staehle; Vlada Stamenković; Daniel Stolper; Alexis Templeton; Ann C Vandaele; Sébastien Viscardy; Christopher R Webster; Paul O Wennberg; Michael L Wong; John Worden
Journal:  Astrobiology       Date:  2018-09-19       Impact factor: 4.335

8.  Defining Electron Bifurcation in the Electron-Transferring Flavoprotein Family.

Authors:  Amaya M Garcia Costas; Saroj Poudel; Anne-Frances Miller; Gerrit J Schut; Rhesa N Ledbetter; Kathryn R Fixen; Lance C Seefeldt; Michael W W Adams; Caroline S Harwood; Eric S Boyd; John W Peters
Journal:  J Bacteriol       Date:  2017-10-03       Impact factor: 3.490

9.  Universal free-energy landscape produces efficient and reversible electron bifurcation.

Authors:  J L Yuly; P Zhang; C E Lubner; J W Peters; D N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-14       Impact factor: 11.205

Review 10.  A physiological perspective on the origin and evolution of photosynthesis.

Authors:  William F Martin; Donald A Bryant; J Thomas Beatty
Journal:  FEMS Microbiol Rev       Date:  2018-03-01       Impact factor: 16.408

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