Literature DB >> 32801212

Universal free-energy landscape produces efficient and reversible electron bifurcation.

J L Yuly1, P Zhang2, C E Lubner3, J W Peters4, D N Beratan5,6,7.   

Abstract

For decades, it was unknown how electron-bifurcating systems in nature prevented energy-wasting short-circuiting reactions that have large driving forces, so synthetic electron-bifurcating molecular machines could not be designed and built. The underpinning free-energy landscapes for electron bifurcation were also enigmatic. We predict that a simple and universal free-energy landscape enables electron bifurcation, and we show that it enables high-efficiency bifurcation with limited short-circuiting (the EB scheme). The landscape relies on steep free-energy slopes in the two redox branches to insulate against short-circuiting using an electron occupancy blockade effect, without relying on nuanced changes in the microscopic rate constants for the short-circuiting reactions. The EB scheme thus unifies a body of observations on biological catalysis and energy conversion, and the scheme provides a blueprint to guide future campaigns to establish synthetic electron bifurcation machines.

Keywords:  bioenergetics; chemiosmotic hypothesis; electron bifurcation; electron transfer; short-circuiting

Year:  2020        PMID: 32801212      PMCID: PMC7474648          DOI: 10.1073/pnas.2010815117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis.

Authors:  Rhesa N Ledbetter; Amaya M Garcia Costas; Carolyn E Lubner; David W Mulder; Monika Tokmina-Lukaszewska; Jacob H Artz; Angela Patterson; Timothy S Magnuson; Zackary J Jay; H Diessel Duan; Jacquelyn Miller; Mary H Plunkett; John P Hoben; Brett M Barney; Ross P Carlson; Anne-Frances Miller; Brian Bothner; Paul W King; John W Peters; Lance C Seefeldt
Journal:  Biochemistry       Date:  2017-08-03       Impact factor: 3.162

2.  How does antimycin inhibit the bc1 complex? A part-time twin.

Authors:  Stéphane Ransac; Jean-Pierre Mazat
Journal:  Biochim Biophys Acta       Date:  2010-06-04

Review 3.  Energy conservation via electron bifurcating ferredoxin reduction and proton/Na(+) translocating ferredoxin oxidation.

Authors:  Wolfgang Buckel; Rudolf K Thauer
Journal:  Biochim Biophys Acta       Date:  2012-07-16

4.  Electron bifurcation: progress and grand challenges.

Authors:  Jonathon L Yuly; Carolyn E Lubner; Peng Zhang; David N Beratan; John W Peters
Journal:  Chem Commun (Camb)       Date:  2019-10-01       Impact factor: 6.222

5.  The Q-Cycle Mechanism of the bc1 Complex: A Biologist's Perspective on Atomistic Studies.

Authors:  Antony R Crofts; Stuart W Rose; Rodney L Burton; Amit V Desai; Paul J A Kenis; Sergei A Dikanov
Journal:  J Phys Chem B       Date:  2017-03-14       Impact factor: 2.991

Review 6.  Electron Bifurcation: A Long-Hidden Energy-Coupling Mechanism.

Authors:  Volker Müller; Nilanjan Pal Chowdhury; Mirko Basen
Journal:  Annu Rev Microbiol       Date:  2018-06-20       Impact factor: 15.500

7.  Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea.

Authors:  Anne-Kristin Kaster; Johanna Moll; Kristian Parey; Rudolf K Thauer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-24       Impact factor: 11.205

Review 8.  Proton pumping in the bc1 complex: a new gating mechanism that prevents short circuits.

Authors:  Antony R Crofts; Sangmoon Lhee; Stephanie B Crofts; Jerry Cheng; Stuart Rose
Journal:  Biochim Biophys Acta       Date:  2006-03-15

Review 9.  Methanogenic archaea: ecologically relevant differences in energy conservation.

Authors:  Rudolf K Thauer; Anne-Kristin Kaster; Henning Seedorf; Wolfgang Buckel; Reiner Hedderich
Journal:  Nat Rev Microbiol       Date:  2008-06-30       Impact factor: 60.633

Review 10.  A new era for electron bifurcation.

Authors:  John W Peters; David N Beratan; Brian Bothner; R Brian Dyer; Caroline S Harwood; Zachariah M Heiden; Russ Hille; Anne K Jones; Paul W King; Yi Lu; Carolyn E Lubner; Shelley D Minteer; David W Mulder; Simone Raugei; Gerrit J Schut; Lance C Seefeldt; Monika Tokmina-Lukaszewska; Oleg A Zadvornyy; Peng Zhang; Michael Ww Adams
Journal:  Curr Opin Chem Biol       Date:  2018-08-01       Impact factor: 8.972

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  6 in total

1.  Kinetic model for reversible radical transfer in ribonucleotide reductase.

Authors:  Clorice R Reinhardt; Daniel Konstantinovsky; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-17       Impact factor: 12.779

2.  Multiple hops move electrons from bacteria to rocks.

Authors:  David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-19       Impact factor: 12.779

Review 3.  Free Energies of Proton-Coupled Electron Transfer Reagents and Their Applications.

Authors:  Rishi G Agarwal; Scott C Coste; Benjamin D Groff; Abigail M Heuer; Hyunho Noh; Giovanny A Parada; Catherine F Wise; Eva M Nichols; Jeffrey J Warren; James M Mayer
Journal:  Chem Rev       Date:  2021-12-20       Impact factor: 72.087

4.  Iron-sulfur flavoenzymes: the added value of making the most ancient redox cofactors and the versatile flavins work together.

Authors:  Maria Antonietta Vanoni
Journal:  Open Biol       Date:  2021-05-05       Impact factor: 6.411

5.  An uncharacteristically low-potential flavin governs the energy landscape of electron bifurcation.

Authors:  Courtney E Wise; Anastasia E Ledinina; David W Mulder; Katherine J Chou; John W Peters; Paul W King; Carolyn E Lubner
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-15       Impact factor: 12.779

6.  Machine Learning for Efficient Prediction of Protein Redox Potential: The Flavoproteins Case.

Authors:  Bruno Giovanni Galuzzi; Antonio Mirarchi; Edoardo Luca Viganò; Luca De Gioia; Chiara Damiani; Federica Arrigoni
Journal:  J Chem Inf Model       Date:  2022-09-20       Impact factor: 6.162

  6 in total

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