Literature DB >> 28615449

Equilibrium and ultrafast kinetic studies manipulating electron transfer: A short-lived flavin semiquinone is not sufficient for electron bifurcation.

John P Hoben1, Carolyn E Lubner2, Michael W Ratzloff2, Gerrit J Schut3, Diep M N Nguyen3, Karl W Hempel1, Michael W W Adams3, Paul W King2, Anne-Frances Miller4.   

Abstract

Flavin-based electron transfer bifurcation is emerging as a fundamental and powerful mechanism for conservation and deployment of electrochemical energy in enzymatic systems. In this process, a pair of electrons is acquired at intermediate reduction potential (i.e. intermediate reducing power), and each electron is passed to a different acceptor, one with lower and the other with higher reducing power, leading to "bifurcation." It is believed that a strongly reducing semiquinone species is essential for this process, and it is expected that this species should be kinetically short-lived. We now demonstrate that the presence of a short-lived anionic flavin semiquinone (ASQ) is not sufficient to infer the existence of bifurcating activity, although such a species may be necessary for the process. We have used transient absorption spectroscopy to compare the rates and mechanisms of decay of ASQ generated photochemically in bifurcating NADH-dependent ferredoxin-NADP+ oxidoreductase and the non-bifurcating flavoproteins nitroreductase, NADH oxidase, and flavodoxin. We found that different mechanisms dominate ASQ decay in the different protein environments, producing lifetimes ranging over 2 orders of magnitude. Capacity for electron transfer among redox cofactors versus charge recombination with nearby donors can explain the range of ASQ lifetimes that we observe. Our results support a model wherein efficient electron propagation can explain the short lifetime of the ASQ of bifurcating NADH-dependent ferredoxin-NADP+ oxidoreductase I and can be an indication of capacity for electron bifurcation.

Entities:  

Keywords:  electron bifurcation; electron transfer; energetics; flavin; flavoprotein; fluorescence; transient absorption spectroscopy

Mesh:

Substances:

Year:  2017        PMID: 28615449      PMCID: PMC5572931          DOI: 10.1074/jbc.M117.794214

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  43 in total

1.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

2.  Redox bifurcations: mechanisms and importance to life now, and at its origin: a widespread means of energy conversion in biology unfolds….

Authors:  Wolfgang Nitschke; Michael J Russell
Journal:  Bioessays       Date:  2011-11-02       Impact factor: 4.345

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Review 4.  Energy conservation via electron bifurcating ferredoxin reduction and proton/Na(+) translocating ferredoxin oxidation.

Authors:  Wolfgang Buckel; Rudolf K Thauer
Journal:  Biochim Biophys Acta       Date:  2012-07-16

Review 5.  Electron bifurcation.

Authors:  John W Peters; Anne-Frances Miller; Anne K Jones; Paul W King; Michael Ww Adams
Journal:  Curr Opin Chem Biol       Date:  2016-03-23       Impact factor: 8.822

6.  Purification and characterization of flavodoxin from Peptostreptococcus elsdenii.

Authors:  S G Mayhew; V Massey
Journal:  J Biol Chem       Date:  1969-02-10       Impact factor: 5.157

7.  Crystal structure of NADH oxidase from Thermus thermophilus.

Authors:  H J Hecht; H Erdmann; H J Park; M Sprinzl; R D Schmid
Journal:  Nat Struct Biol       Date:  1995-12

8.  Flavin-sensitized electrode system for oxygen evolution using photo-electrocatalysis.

Authors:  Rupam Sarma; Madison J Sloan; Anne-Frances Miller
Journal:  Chem Commun (Camb)       Date:  2016-07-07       Impact factor: 6.222

9.  Comparison of the refined crystal structures of wild-type (1.34 A) flavodoxin from Desulfovibrio vulgaris and the S35C mutant (1.44 A) at 100 K.

Authors:  Roberto Artali; Gabriella Bombieri; Fiorella Meneghetti; Gianfranco Gilardi; Sheila J Sadeghi; Davide Cavazzini; Gian Luigi Rossi
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

10.  Overexpression, isotopic labeling, and spectral characterization of Enterobacter cloacae nitroreductase.

Authors:  R L Koder; A F Miller
Journal:  Protein Expr Purif       Date:  1998-06       Impact factor: 1.650

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  5 in total

1.  Distinct properties underlie flavin-based electron bifurcation in a novel electron transfer flavoprotein FixAB from Rhodopseudomonas palustris.

Authors:  H Diessel Duan; Carolyn E Lubner; Monika Tokmina-Lukaszewska; George H Gauss; Brian Bothner; Paul W King; John W Peters; Anne-Frances Miller
Journal:  J Biol Chem       Date:  2018-02-09       Impact factor: 5.157

2.  The reductive half-reaction of two bifurcating electron-transferring flavoproteins: Evidence for changes in flavin reduction potentials mediated by specific conformational changes.

Authors:  Wayne Vigil; Jessica Tran; Dimitri Niks; Gerrit J Schut; Xiaoxuan Ge; Michael W W Adams; Russ Hille
Journal:  J Biol Chem       Date:  2022-04-13       Impact factor: 5.486

Review 3.  Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD+ (Rnf) as Electron Acceptors: A Historical Review.

Authors:  Wolfgang Buckel; Rudolf K Thauer
Journal:  Front Microbiol       Date:  2018-03-14       Impact factor: 5.640

4.  Spectral deconvolution of redox species in the crotonyl-CoA-dependent NADH:ferredoxin oxidoreductase from Megasphaera elsdenii. A flavin-dependent bifurcating enzyme.

Authors:  Wayne Vigil; Dimitri Niks; Sophie Franz-Badur; Nilanjan Chowdhury; Wolfgang Buckel; Russ Hille
Journal:  Arch Biochem Biophys       Date:  2021-02-12       Impact factor: 4.013

Review 5.  On the Natural History of Flavin-Based Electron Bifurcation.

Authors:  Frauke Baymann; Barbara Schoepp-Cothenet; Simon Duval; Marianne Guiral; Myriam Brugna; Carole Baffert; Michael J Russell; Wolfgang Nitschke
Journal:  Front Microbiol       Date:  2018-07-03       Impact factor: 5.640

  5 in total

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