Literature DB >> 17720135

Marcus treatment of endergonic reactions: a commentary.

Antony R Crofts1, Stuart Rose.   

Abstract

Two forms of the equation for expression of the rate constant for electron transfer through a Marcus-type treatment are discussed. In the first (exergonic) form, the Arrhenius exponential term was replaced by its classical Marcus term; in the second (endergonic) form, the forward rate constant was replaced by the reverse rate constant (the forward rate constant in the exergonic direction), which was expanded to an equivalent Marcus term and multiplied by the equilibrium constant. When the classical Marcus treatment was used, these two forms of the rate equation give identical curves relating the logarithm of the rate constant to the driving force. The Marcus term for the relation between activation free-energy, DeltaG#, reorganization energy, lambda, and driving force, DeltaG(o), derived from parabolas for the reactant and product states, was identical when starting from exergonic or endergonic parabolas. Moser and colleagues introduced a quantum mechanical correction factor to the Marcus term in order to fit experimental data. When the same correction factor was applied in the treatment for the endergonic direction by Page and colleagues, a different curve was obtained from that found with the exergonic form. We show that the difference resulted from an algebraic error in development of the endergonic equation.

Entities:  

Mesh:

Year:  2007        PMID: 17720135      PMCID: PMC2238675          DOI: 10.1016/j.bbabio.2007.06.006

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  16 in total

Review 1.  Proton-coupled electron transfer at the Qo-site of the bc1 complex controls the rate of ubihydroquinone oxidation.

Authors:  Antony R Crofts
Journal:  Biochim Biophys Acta       Date:  2004-04-12

Review 2.  The cytochrome bc1 complex: function in the context of structure.

Authors:  Antony R Crofts
Journal:  Annu Rev Physiol       Date:  2004       Impact factor: 19.318

3.  Electron tunneling chains of mitochondria.

Authors:  Christopher C Moser; Tammer A Farid; Sarah E Chobot; P Leslie Dutton
Journal:  Biochim Biophys Acta       Date:  2006-05-05

4.  Electron transfer between biological molecules by thermally activated tunneling.

Authors:  J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1974-09       Impact factor: 11.205

Review 5.  Darwin at the molecular scale: selection and variance in electron tunnelling proteins including cytochrome c oxidase.

Authors:  Christopher C Moser; Christopher C Page; P Leslie Dutton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 6.  Proton translocation by the cytochrome bc1 complexes of phototrophic bacteria: introducing the activated Q-cycle.

Authors:  Armen Y Mulkidjanian
Journal:  Photochem Photobiol Sci       Date:  2006-12-07       Impact factor: 3.982

Review 7.  Biological electron transfer.

Authors:  C C Moser; C C Page; R Farid; P L Dutton
Journal:  J Bioenerg Biomembr       Date:  1995-06       Impact factor: 2.945

8.  Studies of photosynthesis using a pulsed laser. I. Temperature dependence of cytochrome oxidation rate in chromatium. Evidence for tunneling.

Authors:  D DeVault; B Chance
Journal:  Biophys J       Date:  1966-11       Impact factor: 4.033

9.  Interference, fluctuation, and alternation of electron tunneling in protein media. 1. Two tunneling routes in photosynthetic reaction center alternate due to thermal fluctuation of protein conformation.

Authors:  Hirotaka Nishioka; Akihiro Kimura; Takahisa Yamato; Tsutomu Kawatsu; Toshiaki Kakitani
Journal:  J Phys Chem B       Date:  2005-02-10       Impact factor: 2.991

Review 10.  Proton pumping in the bc1 complex: a new gating mechanism that prevents short circuits.

Authors:  Antony R Crofts; Sangmoon Lhee; Stephanie B Crofts; Jerry Cheng; Stuart Rose
Journal:  Biochim Biophys Acta       Date:  2006-03-15
View more
  10 in total

1.  The two last overviews by Colin Allen Wraight (1945-2014) on energy conversion in photosynthetic bacteria.

Authors:  Péter Maróti
Journal:  Photosynth Res       Date:  2015-07-28       Impact factor: 3.573

2.  Heme-copper oxidases use tunneling pathways.

Authors:  David N Beratan; Ilya A Balabin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-07       Impact factor: 11.205

Review 3.  Regulatory interactions in the dimeric cytochrome bc(1) complex: the advantages of being a twin.

Authors:  Raul Covian; Bernard L Trumpower
Journal:  Biochim Biophys Acta       Date:  2008-04-22

4.  Inter-monomer electron transfer is too slow to compete with monomeric turnover in bc(1) complex.

Authors:  Sangjin Hong; Doreen Victoria; Antony R Crofts
Journal:  Biochim Biophys Acta       Date:  2012-03-17

Review 5.  Guidelines for tunneling in enzymes.

Authors:  Christopher C Moser; J L Ross Anderson; P Leslie Dutton
Journal:  Biochim Biophys Acta       Date:  2010-05-10

6.  Mechanistic insights into energy conservation by flavin-based electron bifurcation.

Authors:  Carolyn E Lubner; David P Jennings; David W Mulder; Gerrit J Schut; Oleg A Zadvornyy; John P Hoben; Monika Tokmina-Lukaszewska; Luke Berry; Diep M Nguyen; Gina L Lipscomb; Brian Bothner; Anne K Jones; Anne-Frances Miller; Paul W King; Michael W W Adams; John W Peters
Journal:  Nat Chem Biol       Date:  2017-04-10       Impact factor: 15.040

7.  The dimeric structure of the cytochrome bc(1) complex prevents center P inhibition by reverse reactions at center N.

Authors:  Raul Covian; Bernard L Trumpower
Journal:  Biochim Biophys Acta       Date:  2008-04-11

Review 8.  The mechanism of ubihydroquinone oxidation at the Qo-site of the cytochrome bc1 complex.

Authors:  Antony R Crofts; Sangjin Hong; Charles Wilson; Rodney Burton; Doreen Victoria; Chris Harrison; Klaus Schulten
Journal:  Biochim Biophys Acta       Date:  2013-02-08

Review 9.  The Q-cycle reviewed: How well does a monomeric mechanism of the bc(1) complex account for the function of a dimeric complex?

Authors:  Antony R Crofts; J Todd Holland; Doreen Victoria; Derrick R J Kolling; Sergei A Dikanov; Ryan Gilbreth; Sangmoon Lhee; Richard Kuras; Mariana Guergova Kuras
Journal:  Biochim Biophys Acta       Date:  2008-05-01

10.  Role of the -PEWY-glutamate in catalysis at the Q(o)-site of the Cyt bc(1) complex.

Authors:  Doreen Victoria; Rodney Burton; Antony R Crofts
Journal:  Biochim Biophys Acta       Date:  2012-11-01
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.