Literature DB >> 28393265

Genomic Diversity of Type B3 Bacteriophages of Caulobacter crescentus.

Kurt T Ash1,2, Kristina M Drake1,3, Whitney S Gibbs1,4, Bert Ely5.   

Abstract

The genomes of the type B3 bacteriophages that infect Caulobacter crescentus are among the largest phage genomes thus far deposited into GenBank with sizes over 200 kb. In this study, we introduce six new bacteriophage genomes which were obtained from phage collected from various water systems in the southeastern United States and from tropical locations across the globe. A comparative analysis of the 12 available genomes revealed a "core genome" which accounts for roughly 1/3 of these bacteriophage genomes and is predominately localized to the head, tail, and lysis gene regions. Despite being isolated from geographically distinct locations, the genomes of these bacteriophages are highly conserved in both genome sequence and gene order. We also identified the insertions, deletions, translocations, and horizontal gene transfer events which are responsible for the genomic diversity of this group of bacteriophages and demonstrated that these changes are not consistent with the idea that modular reassortment of genomes occurs in this group of bacteriophages.

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Year:  2017        PMID: 28393265      PMCID: PMC5480614          DOI: 10.1007/s00284-017-1248-4

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  24 in total

Review 1.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

2.  Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery.

Authors:  André M Comeau; Claire Bertrand; Andrei Letarov; Françoise Tétart; H M Krisch
Journal:  Virology       Date:  2007-02-07       Impact factor: 3.616

3.  Complete genome sequence of Caulobacter crescentus bacteriophage φCbK.

Authors:  Gaël Panis; Christophe Lambert; Patrick H Viollier
Journal:  J Virol       Date:  2012-09       Impact factor: 5.103

4.  A theory of modular evolution for bacteriophages.

Authors:  D Botstein
Journal:  Ann N Y Acad Sci       Date:  1980       Impact factor: 5.691

5.  Tablet--next generation sequence assembly visualization.

Authors:  Iain Milne; Micha Bayer; Linda Cardle; Paul Shaw; Gordon Stephen; Frank Wright; David Marshall
Journal:  Bioinformatics       Date:  2009-12-04       Impact factor: 6.937

6.  Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

Authors:  K Tamura; M Nei
Journal:  Mol Biol Evol       Date:  1993-05       Impact factor: 16.240

7.  The Caulobacter crescentus phage phiCbK: genomics of a canonical phage.

Authors:  Jason J Gill; Joel D Berry; William K Russell; Lauren Lessor; Diego A Escobar-Garcia; Daniel Hernandez; Ashley Kane; Jennifer Keene; Matthew Maddox; Rebecca Martin; Sheba Mohan; Ashlyn M Thorn; David H Russell; Ry Young
Journal:  BMC Genomics       Date:  2012-10-10       Impact factor: 3.969

8.  CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus.

Authors:  David Paez-Espino; Itai Sharon; Wesley Morovic; Buffy Stahl; Brian C Thomas; Rodolphe Barrangou; Jillian F Banfield
Journal:  MBio       Date:  2015-04-21       Impact factor: 7.867

9.  A comparison of the Caulobacter NA1000 and K31 genomes reveals extensive genome rearrangements and differences in metabolic potential.

Authors:  Kurt Ash; Theta Brown; Tynetta Watford; LaTia E Scott; Craig Stephens; Bert Ely
Journal:  Open Biol       Date:  2014-10       Impact factor: 6.411

10.  The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

Authors:  Ross Overbeek; Robert Olson; Gordon D Pusch; Gary J Olsen; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Bruce Parrello; Maulik Shukla; Veronika Vonstein; Alice R Wattam; Fangfang Xia; Rick Stevens
Journal:  Nucleic Acids Res       Date:  2013-11-29       Impact factor: 16.971

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  6 in total

1.  A Genome Comparison of T7-like Podoviruses That Infect Caulobacter crescentus.

Authors:  Doreen Nguyen; Bert Ely
Journal:  Curr Microbiol       Date:  2018-02-08       Impact factor: 2.188

2.  The Isolation and Characterization of Kronos, a Novel Caulobacter Rhizosphere Phage that is Similar to Lambdoid Phages.

Authors:  Louis Berrios; Bert Ely
Journal:  Curr Microbiol       Date:  2019-02-27       Impact factor: 2.188

3.  Analyses of four new Caulobacter Phicbkviruses indicate independent lineages.

Authors:  Kiesha Wilson; Bert Ely
Journal:  J Gen Virol       Date:  2019-01-18       Impact factor: 3.891

4.  Novel Caulobacter bacteriophages illustrate the diversity of the podovirus genus Rauchvirus.

Authors:  Bert Ely; Jana Liese; Scott Corley; Doreen Nguyen; Kiesha Wilson; Louis Berrios
Journal:  Arch Virol       Date:  2020-09-01       Impact factor: 2.685

5.  Genomic diversity of bacteriophages infecting Rhodobacter capsulatus and their relatedness to its gene transfer agent RcGTA.

Authors:  Jackson Rapala; Brenda Miller; Maximiliano Garcia; Megan Dolan; Matthew Bockman; Mats Hansson; Daniel A Russell; Rebecca A Garlena; Steven G Cresawn; Alexander B Westbye; J Thomas Beatty; Richard M Alvey; David W Bollivar
Journal:  PLoS One       Date:  2021-11-18       Impact factor: 3.240

6.  A Novel Phage Infecting the Marine Photoheterotrophic Bacterium Citromicrobium bathyomarinum.

Authors:  Ruijie Ma; Shuai Shao; Shuzhen Wei; Junlei Ye; Yahui Yang; Nianzhi Jiao; Rui Zhang
Journal:  Viruses       Date:  2022-03-02       Impact factor: 5.048

  6 in total

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