Literature DB >> 29423729

A Genome Comparison of T7-like Podoviruses That Infect Caulobacter crescentus.

Doreen Nguyen1,2, Bert Ely3.   

Abstract

Bacteriophages remain an understudied component of bacterial communities. Therefore, our laboratory has initiated an effort to isolate large numbers of bacteriophages that infect Caulobacter crescentus to provide an estimate of the diversity of bacteriophages that infect this common environmental bacterium. The majority of the new isolates are phicbkviruses, a genus of giant viruses that appear to be Caulobacter specific. However, we have also isolated several Podoviruses with icosahedral heads and small tails. One of these Podoviruses, designated Lullwater, is similar to two previously isolated Caulobacter phages, Cd1 and Percy. All three have genomes that are approximately 45 kb and contain approximately 30 genes. The gene order is conserved among the three genomes with one of the genes coding for a DNA polymerase that has homology to the family of T7 DNA polymerases. Phylogenetic trees based on either the DNA polymerase or the RNA polymerase amino acid sequences suggests that the three phages represent a new branch of the T7virus tree. Based on these similarities, we concluded that Cd1, Lullwater, and Percy comprise a new group in the T7virus genus.

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Year:  2018        PMID: 29423729     DOI: 10.1007/s00284-018-1445-9

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  18 in total

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Authors:  D Scholl; J Kieleczawa; P Kemp; J Rush; C C Richardson; C Merril; S Adhya; I J Molineux
Journal:  J Mol Biol       Date:  2004-01-30       Impact factor: 5.469

2.  COBALT: constraint-based alignment tool for multiple protein sequences.

Authors:  Jason S Papadopoulos; Richa Agarwala
Journal:  Bioinformatics       Date:  2007-03-01       Impact factor: 6.937

3.  Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Authors:  Chen-Shan Chin; David H Alexander; Patrick Marks; Aaron A Klammer; James Drake; Cheryl Heiner; Alicia Clum; Alex Copeland; John Huddleston; Evan E Eichler; Stephen W Turner; Jonas Korlach
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

4.  Isolation and characterization of Caulobacter crecentus bacteriophage phi Cd1.

Authors:  D West; C Lagenaur; N Agabian
Journal:  J Virol       Date:  1976-02       Impact factor: 5.103

5.  Genomic Diversity of Type B3 Bacteriophages of Caulobacter crescentus.

Authors:  Kurt T Ash; Kristina M Drake; Whitney S Gibbs; Bert Ely
Journal:  Curr Microbiol       Date:  2017-04-10       Impact factor: 2.188

6.  Characterization of novel virulent broad-host-range phages of Xylella fastidiosa and Xanthomonas.

Authors:  Stephen J Ahern; Mayukh Das; Tushar Suvra Bhowmick; Ry Young; Carlos F Gonzalez
Journal:  J Bacteriol       Date:  2013-11-08       Impact factor: 3.490

7.  The genome of bacteriophage phiKMV, a T7-like virus infecting Pseudomonas aeruginosa.

Authors:  Rob Lavigne; Maria V Burkal'tseva; Johan Robben; Nina N Sykilinda; Lidia P Kurochkina; Barbara Grymonprez; Bart Jonckx; Victor N Krylov; Vadim V Mesyanzhinov; Guido Volckaert
Journal:  Virology       Date:  2003-07-20       Impact factor: 3.616

8.  Transposon mutagenesis in Caulobacter crescentus.

Authors:  B Ely; R H Croft
Journal:  J Bacteriol       Date:  1982-02       Impact factor: 3.490

9.  The Caulobacter crescentus phage phiCbK: genomics of a canonical phage.

Authors:  Jason J Gill; Joel D Berry; William K Russell; Lauren Lessor; Diego A Escobar-Garcia; Daniel Hernandez; Ashley Kane; Jennifer Keene; Matthew Maddox; Rebecca Martin; Sheba Mohan; Ashlyn M Thorn; David H Russell; Ry Young
Journal:  BMC Genomics       Date:  2012-10-10       Impact factor: 3.969

10.  Complete Genome Sequence of Caulobacter crescentus Podophage Percy.

Authors:  Roxann A Lerma; T J Tidwell; Jesse L Cahill; Eric S Rasche; Gabriel F Kuty Everett
Journal:  Genome Announc       Date:  2015-11-25
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  3 in total

1.  The Isolation and Characterization of Kronos, a Novel Caulobacter Rhizosphere Phage that is Similar to Lambdoid Phages.

Authors:  Louis Berrios; Bert Ely
Journal:  Curr Microbiol       Date:  2019-02-27       Impact factor: 2.188

2.  Analyses of four new Caulobacter Phicbkviruses indicate independent lineages.

Authors:  Kiesha Wilson; Bert Ely
Journal:  J Gen Virol       Date:  2019-01-18       Impact factor: 3.891

3.  Novel Caulobacter bacteriophages illustrate the diversity of the podovirus genus Rauchvirus.

Authors:  Bert Ely; Jana Liese; Scott Corley; Doreen Nguyen; Kiesha Wilson; Louis Berrios
Journal:  Arch Virol       Date:  2020-09-01       Impact factor: 2.685

  3 in total

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