| Literature DB >> 28384245 |
Delphine Hanot Mambres1, Samira Boarbi1, Patrick Michel1,2, Nora Bouker1, Luisa Escobar-Calle1, Damien Desqueper1,2, Tiziano Fancello1,2, Marjan Van Esbroeck2,3, Jacques Godfroid4, David Fretin1,2, Marcella Mori1,2.
Abstract
OBJECTIVES: The aim of this study was to characterize by classical biotyping and Multi-Locus variable number tandem repeats (VNTR) Analysis (MLVA) all Brucella spp. derived from human cases in Belgium from 1996 to 2015. Final goals were to determine the species and biovar, to trace-back on genetic grounds the origin of each strain when patient history and risk factors were missing, and to survey for particular trends at the national level.Entities:
Mesh:
Substances:
Year: 2017 PMID: 28384245 PMCID: PMC5383062 DOI: 10.1371/journal.pone.0174756
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Results of the Belgian human Brucella strains—classical biotyping.
| 1 | L3/09 | 1996 | Morocco | B. melitensis bv 1 | + | - | - | + | + | - | + | + | + | + | / | NA | NA | NA | NA |
| 2 | L3/10 | 1997 | Turkey | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | / | NA | NA | NA | NA |
| 3 | L3/14 | 1997 | Turkey | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | / | NA | NA | NA | NA |
| 4 | L3/15 | 1997 | Italy | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 5 | L3/23 | 1998 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 6 | L3/107 | 1999 | Peru | B. melitensis bv 1 | + | - | - | + | + | - | + | + | + | + | + | NA | NA | NA | NA |
| 7 | L3/129 | 2000 | ? | B. abortus bv 1 | + | + | + | - | + | + | - | - | - | + | + | NA | NA | NA | NA |
| 8 | L3/130 | 2001 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 9 | L3/131 | 2002 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 10 | L3/134 | 2002 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 11 | L3/135 | 2004 | Libanon | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 12 | L3/136 | 2004 | Libanon | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 13 | L3/137 | 2004 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 14 | L3/138 | 2004 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 15 | L3/139 | 2004 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | NA | NA | NA | NA | ||||
| 16 | L3/140 | 2004 | ? | B. melitensis rough | + | - | - | + | + | - | - | + | + | + | + | NA | NA | NA | NA |
| 17 | L3/141 | 2004 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 18 | L3/147 | 2005 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 19 | L3/148 | 2007 | ? | B. melitensis bv 2 | + | - | - | + | + | + | - | + | + | + | + | NA | NA | NA | NA |
| 20 | L3/149 | 2007 | ? | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 21 | L3/150 | 2007 | ? | B. melitensis bv 2 | + | - | - | + | + | + | - | + | + | + | + | NA | NA | NA | NA |
| 22 | L3/173 | 2010 | Ecuador | B. abortus bv 1 | + | + | + | - | + | + | - | - | - | + | + | NA | NA | NA | NA |
| 23 | L3/200 | 2011 | China | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 24 | L3/201 | 2011 | Turkey | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 25 | L3/202 | 2011 | Turkey | B. melitensis bv 2 | + | - | - | + | + | + | - | + | + | + | + | NA | NA | NA | NA |
| 26 | L3/203 | 2011 | Turkey | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 27 | L3/204 | 2011 | Turkey | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 28 | L3/205 | 2012 | Turkey | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 29 | L3/206 | 2012 | Turkey | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 30 | L3/251 | 2012 | Spain | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | NA | NA | NA | NA |
| 31 | L3/278 | 2014 | ? | B. melitensis bv 3 | + | - | - | + | + | + | +/- | + | - | - | - | - | - | - | +- |
| 32 | L3/289 | 2015 | ? | B. melitensis bv 3 | + | - | - | + | + | + | +/- | + | + | +/- | - | NA | NA | NA | NA |
| 33 | L3/295 | 2015 | Italy | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | - | - | - | +- |
| 34 | L3/296 | 2015 | Italy | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | - | - | - | +- |
| 35 | L3/297 | 2015 | Italy | B. melitensis bv 3 | + | - | - | + | + | + | + | + | + | + | + | - | - | - | +- |
| 36 | L3/298 | 2015 | Afghanistan | B. melitensis bv 1 | + | - | - | + | + | - | + | + | + | + | + | NA | NA | NA | NA |
| 37 | L3/311 | 2015 | Turkey | B. melitensis bv 3 | + | - | +/- | + | + | + | +/- | + | + | +/- | - | - | - | - | +- |
*Year of isolation;
** Land of origin is based on the travel history of the patient.
Highlighted in light grey are atypical reactions.
NA = Not Applicable
MLVA16 genotype of the Belgian human Brucella strains.
| Panel1 | Panel2A | Panel2B | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Strain | CODA ID | MLVA 8 | MLVA11 | Bruce06 | Bruce08 | Bruce11 | Bruce12 | Bruce42 | Bruce43 | Bruce45 | Bruce55 | Bruce18 | Bruce19 | Bruce21 | Bruce04 | Bruce07 | Bruce09 | Bruce16 | Bruce30 |
| 1 | L3/09 | 140 | 361 | 2 | 5 | 3 | 13 | 4 | 2 | 3 | 5 | 5 | 36 | 8 | 4 | 5 | 7 | 8 | 5 |
| 2 | L3/10 | 43 | 104 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 5 | 36 | 8 | 5 | 4 | 3 | 8 | 6 |
| 3 | L3/14 | 42 | 116 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 5 | 7 | 3 | 5 | 5 |
| 4 | L3/15 | 51 | 91 | 3 | 5 | 3 | 13 | 1 | 1 | 3 | 3 | 8 | 43 | 8 | 6 | 8 | 8 | 5 | 3 |
| 5 | L3/23 | 184 | 362 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 3 | 4 | 41 | 8 | 4 | 11 | 3 | 7 | 5 |
| 6 | L3/107 | 80 | 133 | 3 | 4 | 2 | 13 | 3 | 2 | 3 | 3 | 7 | 36 | 6 | 2 | 4 | 8 | 4 | 4 |
| 7 | L3/129 | 28 | 82 | 4 | 5 | 4 | 12 | 2 | 2 | 3 | 3 | 6 | 43 | 8 | 3 | 1 | 6 | 3 | 6 |
| 8 | L3/130 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 5 | 4 | 7 | 4 | 3 |
| 9 | L3/131 | 42 | 116 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 5 | 6 | 3 | 6 | 6 |
| 10 | L3/134 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 5 | 4 | 3 | 6 | 5 |
| 11 | L3/135 | 44 | 110 | 1 | 4 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 8 | 4 | 3 | 7 | 5 |
| 12 | L3/136 | 44 | 110 | 1 | 4 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 8 | 4 | 3 | 7 | 5 |
| 13 | L3/137 | 42 | 116 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 5 | 7 | 3 | 8 | 5 |
| 14 | L3/138 | 42 | 116 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 6 | 10 | 3 | 6 | 5 |
| 15 | L3/139 | 45 | 115 | 1 | 5 | 3 | 12 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 4 | 5 | 3 | 6 | 7 |
| 16 | L3/140 | 51 | 96 | 3 | 5 | 3 | 13 | 1 | 1 | 3 | 3 | 7 | 43 | 8 | 5 | 6 | 10 | 5 | 3 |
| 17 | L3/141 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 5 | 4 | 3 | 10 | 5 |
| 18 | L3/147 | 49 | 87 | 3 | 6 | 3 | 14 | 1 | 1 | 3 | 3 | 7 | 43 | 8 | 5 | 7 | 12 | 6 | 3 |
| 19 | L3/148 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 4 | 4 | 3 | 9 | 5 |
| 20 | L3/149 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 4 | 4 | 3 | 5 | 4 |
| 21 | L3/150 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 6 | 4 | 3 | 3 | 4 |
| 22 | L3/173 | 185 | 363 | 4 | 6 | 3 | 12 | 2 | 2 | 3 | 3 | 6 | 43 | 8 | 5 | 4 | 3 | 5 | 5 |
| 23 | L3/200 | 83 | 298 | 1 | 5 | 3 | 14 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 6 | 5 | 3 | 9 | 9 |
| 24 | L3/201 | 42 | 116 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 4 | 4 | 3 | 5 | 4 |
| 25 | L3/202 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 6 | 4 | 3 | 7 | 4 |
| 26 | L3/203 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 5 | 5 | 3 | 3 | 4 |
| 27 | L3/204 | 43 | 125 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 2 | 4 | 41 | 8 | 5 | 5 | 3 | 3 | 4 |
| 28 | L3/205 | 186 | 364 | 1 | 3 | 3 | 13 | 3 | 2 | 3 | 3 | 4 | 41 | 8 | 5 | 5 | 3 | 3 | 4 |
| 29 | L3/206 | 187 | 365 | 1 | 5 | 3 | 13 | 3 | 2 | 3 | 3 | 4 | 41 | 8 | 5 | 4 | 3 | 4 | 4 |
| 30 | L3/251 | 188 | 366 | 3 | 5 | 3 | 13 | 2 | 1 | 3 | 3 | 7 | 43 | 8 | 5 | 4 | 9 | 10 | 3 |
| 31 | L3/278 | 42 | 367 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 42 | 8 | 8 | 6 | 11 | 7 | 6 |
| 32 | L3/289 | 42 | 116 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 4 | 7 | 3 | 7 | 6 |
| 33 | L3/295 | 51 | 96 | 3 | 5 | 3 | 13 | 1 | 1 | 3 | 3 | 7 | 43 | 8 | 6 | 3 | 11 | 5 | 3 |
| 34 | L3/296 | 51 | 96 | 3 | 5 | 3 | 13 | 1 | 1 | 3 | 3 | 7 | 43 | 8 | 6 | 3 | 11 | 5 | 3 |
| 35 | L3/297 | 51 | 96 | 3 | 5 | 3 | 13 | 1 | 1 | 3 | 3 | 7 | 43 | 8 | 6 | 3 | 11 | 5 | 3 |
| 36 | L3/298 | 42 | 116 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 41 | 8 | 3 | 4 | 3 | 4 | 5 |
| 37 | L3/311 | 42 | 368 | 1 | 5 | 3 | 13 | 2 | 2 | 3 | 2 | 4 | 40 | 8 | 9 | 7 | 3 | 7 | 5 |
MLVA8 and MLVA11 genotypes were derived by comparison with data in http://microbesgenotyping.i2bc.paris-saclay.fr/. Each marker was calibrated by the 16M B. melitensis reference strain units.
Fig 1Minimum spanning tree obtained with MLVA-11 data of Belgian human isolates together with human strains worldwide (public databases).
Each strain is represented by a circle. Large circles regroup strain with identical genotypes dimensionally proportional to the number of entries. The lines, whose length is drawn on the basis of the number of mutations (number of variant VNTR), connect the different genotypes. The numbers aside the lines indicate the number of variant VNTRs. The grey areas connect genotypes with maximum three-locus variants. The East Mediterranean group is colored in blue, the America group in red, the West Mediterranean group in green, and the Belgian strains in yellow. Arrows describe origins for some Belgian isolates.
MLVA11 predicted geographical origin of the Belgian human Brucella strains.
| Strain | CODA ID | Land of origin by information | Predicted land of origin by MLVA 11 |
|---|---|---|---|
| 1 | L3/09 | Morocco | Morocco |
| 2 | L3/10 | Turkey | Turkey |
| 3 | L3/14 | Turkey | Turkey |
| 4 | L3/15 | Italy | Italy |
| 5 | L3/23 | ? | ? |
| 6 | L3/107 | Peru | Peru |
| 7 | L3/129 | ? | ? |
| 8 | L3/130 | ? | Turkey |
| 9 | L3/131 | ? | Turkey |
| 10 | L3/134 | ? | Turkey |
| 11 | L3/135 | Libanon | Libanon |
| 12 | L3/136 | Libanon | Libanon |
| 13 | L3/137 | ? | Turkey |
| 14 | L3/138 | ? | Turkey |
| 15 | L3/139 | ? | China |
| 16 | L3/140 | ? | Italy |
| 17 | L3/141 | ? | Turkey |
| 18 | L3/147 | ? | ? |
| 19 | L3/148 | ? | Turkey |
| 20 | L3/149 | ? | Turkey |
| 21 | L3/150 | ? | Turkey |
| 22 | L3/173 | Ecuador | Ecuador |
| 23 | L3/200 | China | China |
| 24 | L3/201 | Turkey | Turkey |
| 25 | L3/202 | Turkey | Turkey |
| 26 | L3/203 | Turkey | Turkey |
| 27 | L3/204 | Turkey | Turkey |
| 28 | L3/205 | Turkey | Turkey |
| 29 | L3/206 | Turkey | Turkey |
| 30 | L3/251 | Spain | Spain |
| 31 | L3/278 | ? | ? |
| 32 | L3/289 | ? | Turkey |
| 33 | L3/295 | Italy | Italy |
| 34 | L3/296 | Italy | Italy |
| 35 | L3/297 | Italy | Italy |
| 36 | L3/298 | Afghanistan | Afghanistan |
| 37 | L3/311 | Turkey | Turkey |