Literature DB >> 28378578

Concert along the Edge: Dynamics and the Nature of the Border between General and Specific Acid-Base Catalysis.

Hannah R Aziz1, Daniel A Singleton1.   

Abstract

Reactions that involve a combination of proton transfer and heavy-atom bonding changes are normally categorized by whether the proton transfer is occurring during the rate-limiting step, as in the distinction between general and specific acid-base catalysis. The experimental and computational study here of a β-ketoacid decarboxylation shows how the distinction between the two mechanisms breaks down near its border due to the differing time scales for proton versus heavy-atom motion. Isotope effects in the decarboxylation of benzoylacetic acid support a transition state in which the proton transfer is complete. In quasiclassical trajectories passing through this transition state, the new O-H bond after proton transfer undergoes several vibrations before heavy-atom motion completes the reaction. The bonding changes are thus temporally separated at a "dynamic intermediate" structure that acts equivalently to an ordinary intermediate in the trajectories, including the reversal of trajectories at the intermediate when the second "step" fails, but the structure is not an energy minimum. The results define a border between mechanisms where the usual energetic definition of intermediates is not meaningful.

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Year:  2017        PMID: 28378578      PMCID: PMC5502124          DOI: 10.1021/jacs.7b02148

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Uncatalyzed and amine catalyzed decarboxylation of acetoacetic acid: an examination in terms of No Barrier Theory.

Authors:  J Peter Guthrie
Journal:  Bioorg Chem       Date:  2002-02       Impact factor: 5.275

2.  Dynamics, transition states, and timing of bond formation in Diels-Alder reactions.

Authors:  Kersey Black; Peng Liu; Lai Xu; Charles Doubleday; Kendall N Houk
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

3.  Dynamic effects on the periselectivity, rate, isotope effects, and mechanism of cycloadditions of ketenes with cyclopentadiene.

Authors:  Bryson R Ussing; Chao Hang; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

4.  Direct Chemical Dynamics Simulations.

Authors:  Subha Pratihar; Xinyou Ma; Zahra Homayoon; George L Barnes; William L Hase
Journal:  J Am Chem Soc       Date:  2017-02-09       Impact factor: 15.419

5.  Long live vinylidene! A new view of the H(2)C=C: --> HC triple bond CH rearrangement from ab initio molecular dynamics.

Authors:  R L Hayes; E Fattal; N Govind; E A Carter
Journal:  J Am Chem Soc       Date:  2001-01-31       Impact factor: 15.419

6.  Transition-state geometry measurements from (13)c isotope effects. The experimental transition state for the epoxidation of alkenes with oxaziridines.

Authors:  Jennifer S Hirschi; Tetsuya Takeya; Chao Hang; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

7.  Recrossing and dynamic matching effects on selectivity in a Diels-Alder reaction.

Authors:  Zhihong Wang; Jennifer S Hirschi; Daniel A Singleton
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

Review 8.  Proton-coupled electron transfer in solution, proteins, and electrochemistry.

Authors:  Sharon Hammes-Schiffer; Alexander V Soudackov
Journal:  J Phys Chem B       Date:  2008-10-09       Impact factor: 2.991

9.  A case study of the mechanism of alcohol-mediated Morita Baylis-Hillman reactions. The importance of experimental observations.

Authors:  R Erik Plata; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2015-03-13       Impact factor: 15.419

10.  Isotope effects, dynamic matching, and solvent dynamics in a Wittig reaction. Betaines as bypassed intermediates.

Authors:  Zhuo Chen; Yexenia Nieves-Quinones; Jack R Waas; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2014-09-12       Impact factor: 15.419

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  4 in total

1.  Ab Initio Molecular Dynamics Simulations of the SN1/SN2 Mechanistic Continuum in Glycosylation Reactions.

Authors:  Yue Fu; Leonardo Bernasconi; Peng Liu
Journal:  J Am Chem Soc       Date:  2021-01-13       Impact factor: 15.419

2.  Monoaurated vs. diaurated intermediates: causality or independence?

Authors:  Mariarosa Anania; Lucie Jašíková; Jan Zelenka; Elena Shcherbachenko; Juraj Jašík; Jana Roithová
Journal:  Chem Sci       Date:  2019-12-13       Impact factor: 9.825

3.  Unusual KIE and dynamics effects in the Fe-catalyzed hetero-Diels-Alder reaction of unactivated aldehydes and dienes.

Authors:  Yuhong Yang; Xiaoyong Zhang; Li-Ping Zhong; Jialing Lan; Xin Li; Chuang-Chuang Li; Lung Wa Chung
Journal:  Nat Commun       Date:  2020-04-15       Impact factor: 14.919

4.  Molecular Understanding of the Catalytic Consequence of Ketene Intermediates under Confinement.

Authors:  Wei Chen; Guangchao Li; Xianfeng Yi; Sarah J Day; Karolina A Tarach; Zhiqiang Liu; Shang-Bin Liu; Shik Chi Edman Tsang; Kinga Góra-Marek; Anmin Zheng
Journal:  J Am Chem Soc       Date:  2021-09-03       Impact factor: 15.419

  4 in total

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