Literature DB >> 28118543

Direct Chemical Dynamics Simulations.

Subha Pratihar1, Xinyou Ma1, Zahra Homayoon1, George L Barnes2, William L Hase1.   

Abstract

In a direct dynamics simulation, the technologies of chemical dynamics and electronic structure theory are coupled so that the potential energy, gradient, and Hessian required from the simulation are obtained directly from the electronic structure theory. These simulations are extensively used to (1) interpret experimental results and understand the atomic-level dynamics of chemical reactions; (2) illustrate the ability of classical simulations to correctly interpret and predict chemical dynamics when quantum effects are expected to be unimportant; (3) obtain the correct classical dynamics predicted by an electronic structure theory; (4) determine a deeper understanding of when statistical theories are valid for predicting the mechanisms and rates of chemical reactions; and (5) discover new reaction pathways and chemical dynamics. Direct dynamics simulation studies are described for bimolecular SN2 nucleophilic substitution, unimolecular decomposition, post-transition-state dynamics, mass spectrometry experiments, and semiclassical vibrational spectra. Also included are discussions of quantum effects, the accuracy of classical chemical dynamics simulation, and the methodology of direct dynamics.

Entities:  

Mesh:

Year:  2017        PMID: 28118543     DOI: 10.1021/jacs.6b12017

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

1.  Surface-Induced Dissociation: An Effective Method for Characterization of Protein Quaternary Structure.

Authors:  Alyssa Q Stiving; Zachary L VanAernum; Florian Busch; Sophie R Harvey; Samantha H Sarni; Vicki H Wysocki
Journal:  Anal Chem       Date:  2018-12-18       Impact factor: 6.986

2.  Concert along the Edge: Dynamics and the Nature of the Border between General and Specific Acid-Base Catalysis.

Authors:  Hannah R Aziz; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2017-04-11       Impact factor: 15.419

Review 3.  Reaction Space Projector (ReSPer) for Visualizing Dynamic Reaction Routes Based on Reduced-Dimension Space.

Authors:  Takuro Tsutsumi; Yuriko Ono; Tetsuya Taketsugu
Journal:  Top Curr Chem (Cham)       Date:  2022-03-10

4.  A chemical dynamics study on the gas phase formation of thioformaldehyde (H2CS) and its thiohydroxycarbene isomer (HCSH).

Authors:  Srinivas Doddipatla; Chao He; Ralf I Kaiser; Yuheng Luo; Rui Sun; Galiya R Galimova; Alexander M Mebel; Tom J Millar
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-28       Impact factor: 11.205

5.  Ab Initio Molecular Dynamics Simulations of the SN1/SN2 Mechanistic Continuum in Glycosylation Reactions.

Authors:  Yue Fu; Leonardo Bernasconi; Peng Liu
Journal:  J Am Chem Soc       Date:  2021-01-13       Impact factor: 15.419

6.  Roaming pathways and survival probability in real-time collisional dynamics of cold and controlled bialkali molecules.

Authors:  Jacek Kłos; Qingze Guan; Hui Li; Ming Li; Eite Tiesinga; Svetlana Kotochigova
Journal:  Sci Rep       Date:  2021-05-19       Impact factor: 4.379

7.  Theoretical studies on triplet-state driven dissociation of formaldehyde by quasi-classical molecular dynamics simulation on machine-learning potential energy surface.

Authors:  Shichen Lin; Daoling Peng; Weitao Yang; Feng Long Gu; Zhenggang Lan
Journal:  J Chem Phys       Date:  2021-12-07       Impact factor: 3.488

8.  Protonated glycine supramolecular systems: the need for quantum dynamics.

Authors:  Fabio Gabas; Giovanni Di Liberto; Riccardo Conte; Michele Ceotto
Journal:  Chem Sci       Date:  2018-09-17       Impact factor: 9.825

9.  Selective hydrogenation of 1,3-butadiene catalyzed by a single Pd atom anchored on graphene: the importance of dynamics.

Authors:  Yingxin Feng; Linsen Zhou; Qiang Wan; Sen Lin; Hua Guo
Journal:  Chem Sci       Date:  2018-06-14       Impact factor: 9.825

10.  Tipping the balance: theoretical interrogation of divergent extended heterolytic fragmentations.

Authors:  Croix J Laconsay; Ka Yi Tsui; Dean J Tantillo
Journal:  Chem Sci       Date:  2020-01-09       Impact factor: 9.825

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