Literature DB >> 19146405

Transition-state geometry measurements from (13)c isotope effects. The experimental transition state for the epoxidation of alkenes with oxaziridines.

Jennifer S Hirschi1, Tetsuya Takeya, Chao Hang, Daniel A Singleton.   

Abstract

We here suggest and evaluate a methodology for the measurement of specific interatomic distances from a combination of theoretical calculations and experimentally measured (13)C kinetic isotope effects. This process takes advantage of a broad diversity of transition structures available for the epoxidation of 2-methyl-2-butene with oxaziridines. From the isotope effects calculated for these transition structures, a theory-independent relationship between the C-O bond distances of the newly forming bonds and the isotope effects is established. Within the precision of the measurement, this relationship in combination with the experimental isotope effects provides a highly accurate picture of the C-O bonds forming at the transition state. The diversity of transition structures also allows an evaluation of the Schramm process for defining transition-state geometries on the basis of calculations at nonstationary points, and the methodology is found to be reasonably accurate.

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Year:  2009        PMID: 19146405      PMCID: PMC2640442          DOI: 10.1021/ja8088636

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

1.  Kinetic Isotope Effects and Transition State Geometries. A Theoretical Investigation of E2 Model Systems.

Authors:  Sanne Schrøder Glad; Frank Jensen
Journal:  J Org Chem       Date:  1997-01-24       Impact factor: 4.354

2.  A new form of kinetic isotope effect. Dynamic effects on isotopic selectivity and regioselectivity.

Authors:  Daniel A Singleton; Chao Hang; Michael J Szymanski; Erin E Greenwald
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

3.  Dynamic effects on the periselectivity, rate, isotope effects, and mechanism of cycloadditions of ketenes with cyclopentadiene.

Authors:  Bryson R Ussing; Chao Hang; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

4.  Transition state structure of 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Escherichia coli and its similarity to transition state analogues.

Authors:  Vipender Singh; Jeffrey E Lee; Sara Núñez; P Lynne Howell; Vern L Schramm
Journal:  Biochemistry       Date:  2005-09-06       Impact factor: 3.162

5.  Transition-State Spectroscopy of Cyclooctatetraene

Authors: 
Journal:  Science       Date:  1996-06-07       Impact factor: 47.728

6.  One-third-the-sites transition-state inhibitors for purine nucleoside phosphorylase.

Authors:  R W Miles; P C Tyler; R H Furneaux; C K Bagdassarian; V L Schramm
Journal:  Biochemistry       Date:  1998-06-16       Impact factor: 3.162

7.  Transition-state analysis of nucleoside hydrolase from Crithidia fasciculata.

Authors:  B A Horenstein; D W Parkin; B Estupiñán; V L Schramm
Journal:  Biochemistry       Date:  1991-11-05       Impact factor: 3.162

8.  Acyclic ribooxacarbenium ion mimics as transition state analogues of human and malarial purine nucleoside phosphorylases.

Authors:  Erika A Taylor; Keith Clinch; Peter M Kelly; Lei Li; Gary B Evans; Peter C Tyler; Vern L Schramm
Journal:  J Am Chem Soc       Date:  2007-05-11       Impact factor: 15.419

9.  Electronic nature of the transition state for nucleoside hydrolase. A blueprint for inhibitor design.

Authors:  B A Horenstein; V L Schramm
Journal:  Biochemistry       Date:  1993-07-20       Impact factor: 3.162

10.  Explanation of the unusual temperature dependence of the atmospherically important OH + H(2)S --> H(2)O + HS reaction and prediction of the rate constant at combustion temperatures.

Authors:  Benjamin A Ellingson; Donald G Truhlar
Journal:  J Am Chem Soc       Date:  2007-10-02       Impact factor: 15.419

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  21 in total

1.  Uridine phosphorylase from Trypanosoma cruzi: kinetic and chemical mechanisms.

Authors:  Rafael G Silva; Vern L Schramm
Journal:  Biochemistry       Date:  2011-09-27       Impact factor: 3.162

Review 2.  Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes.

Authors:  Vern L Schramm
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

3.  Transition state analysis of the arsenolytic depyrimidination of thymidine by human thymidine phosphorylase.

Authors:  Phillip A Schwartz; Mathew J Vetticatt; Vern L Schramm
Journal:  Biochemistry       Date:  2011-02-03       Impact factor: 3.162

4.  Arsenate and phosphate as nucleophiles at the transition states of human purine nucleoside phosphorylase.

Authors:  Rafael G Silva; Jennifer S Hirschi; Mahmoud Ghanem; Andrew S Murkin; Vern L Schramm
Journal:  Biochemistry       Date:  2011-03-10       Impact factor: 3.162

5.  Transition states of uncatalyzed hydrolysis and aminolysis reactions of a ribosomal P-site substrate determined by kinetic isotope effects.

Authors:  David A Hiller; Minghong Zhong; Vipender Singh; Scott A Strobel
Journal:  Biochemistry       Date:  2010-05-11       Impact factor: 3.162

6.  Sensitive and Accurate 13C Kinetic Isotope Effect Measurements Enabled by Polarization Transfer.

Authors:  Eugene E Kwan; Yongho Park; Harrison A Besser; Thayer L Anderson; Eric N Jacobsen
Journal:  J Am Chem Soc       Date:  2016-12-29       Impact factor: 15.419

7.  Transition State Analysis of Adenosine Triphosphate Phosphoribosyltransferase.

Authors:  Gert-Jan Moggré; Myles B Poulin; Peter C Tyler; Vern L Schramm; Emily J Parker
Journal:  ACS Chem Biol       Date:  2017-09-19       Impact factor: 5.100

8.  Isotope effects and heavy-atom tunneling in the Roush allylboration of aldehydes.

Authors:  Mathew J Vetticatt; Daniel A Singleton
Journal:  Org Lett       Date:  2012-04-16       Impact factor: 6.005

9.  Kinetic isotope effects reveal early transition state of protein lysine methyltransferase SET8.

Authors:  Joshua A Linscott; Kanishk Kapilashrami; Zhen Wang; Chamara Senevirathne; Ian R Bothwell; Gil Blum; Minkui Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-09       Impact factor: 11.205

10.  Substrate and Transition State Binding in Alkaline Phosphatase Analyzed by Computation of Oxygen Isotope Effects.

Authors:  Daniel Roston; Qiang Cui
Journal:  J Am Chem Soc       Date:  2016-08-31       Impact factor: 15.419

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