Literature DB >> 11149953

A model for the emergence of cooperation, interdependence, and structure in evolving networks.

S Jain1, S Krishna.   

Abstract

Evolution produces complex and structured networks of interacting components in chemical, biological, and social systems. We describe a simple mathematical model for the evolution of an idealized chemical system to study how a network of cooperative molecular species arises and evolves to become more complex and structured. The network is modeled by a directed weighted graph whose positive and negative links represent "catalytic" and "inhibitory" interactions among the molecular species, and which evolves as the least populated species (typically those that go extinct) are replaced by new ones. A small autocatalytic set, appearing by chance, provides the seed for the spontaneous growth of connectivity and cooperation in the graph. A highly structured chemical organization arises inevitably as the autocatalytic set enlarges and percolates through the network in a short analytically determined timescale. This self organization does not require the presence of self-replicating species. The network also exhibits catastrophes over long timescales triggered by the chance elimination of "keystone" species, followed by recoveries.

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Year:  2001        PMID: 11149953      PMCID: PMC14623          DOI: 10.1073/pnas.98.2.543

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  9 in total

1.  Emergence of scaling in random networks

Authors: 
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

2.  Compositional genomes: prebiotic information transfer in mutually catalytic noncovalent assemblies.

Authors:  D Segré; D Ben-Eli; D Lancet
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

3.  Modeling heart rate variability by stochastic feedback.

Authors:  L A Amaral; A L Goldberger; H E Stanley
Journal:  Comput Phys Commun       Date:  1999       Impact factor: 4.390

4.  Punctuated equilibrium and criticality in a simple model of evolution.

Authors: 
Journal:  Phys Rev Lett       Date:  1993-12-13       Impact factor: 9.161

5.  Collective dynamics of 'small-world' networks.

Authors:  D J Watts; S H Strogatz
Journal:  Nature       Date:  1998-06-04       Impact factor: 49.962

6.  The evolution of diversity in replicator networks.

Authors:  R Happel; P F Stadler
Journal:  J Theor Biol       Date:  1998-12-07       Impact factor: 2.691

7.  Autocatalytic sets of proteins.

Authors:  S A Kauffman
Journal:  J Theor Biol       Date:  1986-03-07       Impact factor: 2.691

8.  [A system theoretic model for biogenesis].

Authors:  O E Rössler
Journal:  Z Naturforsch B       Date:  1971-08       Impact factor: 1.047

Review 9.  Selforganization of matter and the evolution of biological macromolecules.

Authors:  M Eigen
Journal:  Naturwissenschaften       Date:  1971-10
  9 in total
  34 in total

1.  Large extinctions in an evolutionary model: the role of innovation and keystone species.

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

2.  Symmetric structures and equifinality of evolution outcomes in simple neural network models.

Authors:  S I Bartsev; O D Bartseva
Journal:  Dokl Biochem Biophys       Date:  2002 Sep-Oct       Impact factor: 0.788

3.  A stochastic model of autocatalytic reaction networks.

Authors:  Alessandro Filisetti; Alex Graudenzi; Roberto Serra; Marco Villani; Rudolf M Füchslin; Norman Packard; Stuart A Kauffman; Irene Poli
Journal:  Theory Biosci       Date:  2011-10-07       Impact factor: 1.919

Review 4.  Evolution of Autocatalytic Sets in Computational Models of Chemical Reaction Networks.

Authors:  Wim Hordijk
Journal:  Orig Life Evol Biosph       Date:  2015-10-23       Impact factor: 1.950

Review 5.  Adaptive coevolutionary networks: a review.

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6.  Stochastic innovation as a mechanism by which catalysts might self-assemble into chemical reaction networks.

Authors:  Justin A Bradford; Ken A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-04       Impact factor: 11.205

7.  Boltzmann, Lotka and Volterra and spatial structural evolution: an integrated methodology for some dynamical systems.

Authors:  Alan Wilson
Journal:  J R Soc Interface       Date:  2008-08-06       Impact factor: 4.118

8.  Diversity sustains an evolving network.

Authors:  Ravi Mehrotra; Vikram Soni; Sanjay Jain
Journal:  J R Soc Interface       Date:  2008-11-25       Impact factor: 4.118

Review 9.  The last universal common ancestor: emergence, constitution and genetic legacy of an elusive forerunner.

Authors:  Nicolas Glansdorff; Ying Xu; Bernard Labedan
Journal:  Biol Direct       Date:  2008-07-09       Impact factor: 4.540

10.  Mutations and lethality in simulated prebiotic networks.

Authors:  Aron Inger; Ariel Solomon; Barak Shenhav; Tsviya Olender; Doron Lancet
Journal:  J Mol Evol       Date:  2009-09-29       Impact factor: 2.395

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