Literature DB >> 28375736

Structures of Large Protein Complexes Determined by Nuclear Magnetic Resonance Spectroscopy.

Chengdong Huang1, Charalampos G Kalodimos1.   

Abstract

Nuclear magnetic resonance (NMR) spectroscopy has been instrumental during the past two decades in providing high-resolution structures of protein complexes. It has been the method of choice for determining the structure of dynamic protein complexes, which are typically recalcitrant to other structural techniques. Until recently, NMR spectroscopy has yielded structures of small or medium-sized protein complexes, up to approximately 30-40 kDa. Major breakthroughs during the past decade, especially in isotope-labeling techniques, have enabled NMR characterization of large protein systems with molecular weights of hundreds of kDa. This has provided unique insights into the binding, dynamic, and allosteric properties of large systems. Notably, there is now a slowly but steadily growing list of large, dynamic protein complexes whose atomic structure has been determined by NMR. Many of these complexes are characterized by a high degree of flexibility and, thus, their structures could not have been obtained using other structural methods. Especially in the field of molecular chaperones, NMR has recently provided the first-ever high-resolution structures of their complexes with unfolded proteins. Further technological advances will establish NMR as the primary tool for obtaining atomic structures of challenging systems with even higher complexity.

Keywords:  biomolecular NMR; large protein complexes; protein dynamics; protein–protein complexes

Mesh:

Substances:

Year:  2017        PMID: 28375736     DOI: 10.1146/annurev-biophys-070816-033701

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  21 in total

1.  The dynamic conformational landscape of the protein methyltransferase SETD8.

Authors:  Shi Chen; Rafal P Wiewiora; Fanwang Meng; Nicolas Babault; Anqi Ma; Wenyu Yu; Kun Qian; Hao Hu; Hua Zou; Junyi Wang; Shijie Fan; Gil Blum; Fabio Pittella-Silva; Kyle A Beauchamp; Wolfram Tempel; Hualiang Jiang; Kaixian Chen; Robert J Skene; Yujun George Zheng; Peter J Brown; Jian Jin; Cheng Luo; John D Chodera; Minkui Luo
Journal:  Elife       Date:  2019-05-13       Impact factor: 8.140

2.  Conformational heterogeneity in the Hsp70 chaperone-substrate ensemble identified from analysis of NMR-detected titration data.

Authors:  Ashok Sekhar; Jayashree Nagesh; Rina Rosenzweig; Lewis E Kay
Journal:  Protein Sci       Date:  2017-09-18       Impact factor: 6.725

3.  Automatic methyl assignment in large proteins by the MAGIC algorithm.

Authors:  Yoan R Monneau; Paolo Rossi; Anusarka Bhaumik; Chengdong Huang; Yajun Jiang; Tamjeed Saleh; Tao Xie; Qiong Xing; Charalampos G Kalodimos
Journal:  J Biomol NMR       Date:  2017-11-02       Impact factor: 2.835

Review 4.  Single-Molecule Fluorescence Applied to Translation.

Authors:  Arjun Prabhakar; Elisabetta Viani Puglisi; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 5.  Selective Modulation of Dynamic Protein Complexes.

Authors:  Julie M Garlick; Anna K Mapp
Journal:  Cell Chem Biol       Date:  2020-08-11       Impact factor: 8.116

6.  Removal of 2H-decoupling sidebands in 13CHD2 13C-CEST profiles.

Authors:  Youlin Xia; Tairan Yuwen; Aizhuo Liu; Charalampos G Kalodimos
Journal:  J Biomol NMR       Date:  2021-03-20       Impact factor: 2.835

7.  Evaluation of the tert-butyl group as a probe for NMR studies of macromolecular complexes.

Authors:  Sofia Bali; Jaime Guerrero; Jared Smothers; Charis Springhower; Rashmi Voleti; Gerardo A Acosta; Kyle D Brewer; Fernando Albericio; Josep Rizo
Journal:  J Biomol NMR       Date:  2021-09-09       Impact factor: 2.582

8.  Promiscuous binding by Hsp70 results in conformational heterogeneity and fuzzy chaperone-substrate ensembles.

Authors:  Rina Rosenzweig; Ashok Sekhar; Jayashree Nagesh; Lewis E Kay
Journal:  Elife       Date:  2017-07-14       Impact factor: 8.140

9.  Confirmation for conformational selection.

Authors:  Yajun Jiang; Charalampos G Kalodimos
Journal:  Elife       Date:  2018-02-20       Impact factor: 8.140

10.  Structures of chaperone-substrate complexes docked onto the export gate in a type III secretion system.

Authors:  Qiong Xing; Ke Shi; Athina Portaliou; Paolo Rossi; Anastassios Economou; Charalampos G Kalodimos
Journal:  Nat Commun       Date:  2018-05-02       Impact factor: 14.919

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