Literature DB >> 33745068

Removal of 2H-decoupling sidebands in 13CHD2 13C-CEST profiles.

Youlin Xia1, Tairan Yuwen2, Aizhuo Liu3, Charalampos G Kalodimos4.   

Abstract

A unique aspect of NMR is its capacity to provide integrated insight into both the structure and intrinsic dynamics of biomolecules. Chemical exchange phenomena that often serve as probes of dynamic processes in biological macromolecules can be quantitatively investigated with chemical exchange saturation transfer (CEST) experiments. 2H-decoupling sidebands, however, always occur in the profiles of 13CHD2 13C-CEST experiments when using the simple CW (continuous wave) method, which may obscure the detection of minor dips of excited states. Traditionally, these sidebands are manually eliminated from the profiles before data analysis by removing experimental points in the range of 2H-decoupling field strength ±50 Hz away from the major dips of the ground state on either side of the dips. Unfortunately, this may also eliminate potential minor dips if they overlap with the decoupling sidebands. Here, we developed methods that use pseudo-continuous waves with variable RF amplitudes distributed onto ramps for 2H decoupling. The new methods were thoroughly validated on Bruker spectrometers at a range of fields (1H frequencies of 600, 700, and 850 MHz, and 1.1 GHz). By using these methods, we successfully removed the sidebands from the NMR profiles of 13CHD2 13C-CEST experiments.

Entities:  

Keywords:  CEST; Decoupling ramp; Dynamics; Sidebands

Mesh:

Year:  2021        PMID: 33745068      PMCID: PMC8342043          DOI: 10.1007/s10858-021-00362-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

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Authors:  A G Palmer; C D Kroenke; J P Loria
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  A 2D ¹³C-CEST experiment for studying slowly exchanging protein systems using methyl probes: an application to protein folding.

Authors:  Guillaume Bouvignies; Lewis E Kay
Journal:  J Biomol NMR       Date:  2012-06-12       Impact factor: 2.835

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Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

Review 4.  NMR spectroscopy brings invisible protein states into focus.

Authors:  Andrew J Baldwin; Lewis E Kay
Journal:  Nat Chem Biol       Date:  2009-11       Impact factor: 15.040

Review 5.  Structures of Large Protein Complexes Determined by Nuclear Magnetic Resonance Spectroscopy.

Authors:  Chengdong Huang; Charalampos G Kalodimos
Journal:  Annu Rev Biophys       Date:  2017-03-17       Impact factor: 12.981

Review 6.  Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer.

Authors:  Pramodh Vallurupalli; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-19       Impact factor: 2.835

7.  Probing slow chemical exchange at carbonyl sites in proteins by chemical exchange saturation transfer NMR spectroscopy.

Authors:  Pramodh Vallurupalli; Lewis E Kay
Journal:  Angew Chem Int Ed Engl       Date:  2013-02-28       Impact factor: 15.336

8.  Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds.

Authors:  Paul Schanda; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2005-06-08       Impact factor: 15.419

Review 9.  Decoupling: theory and practice. I. Current methods and recent concepts.

Authors:  R Freeman; E Kupce
Journal:  NMR Biomed       Date:  1997-12       Impact factor: 4.044

10.  A new decoupling method for accurate quantification of polyethylene copolymer composition and triad sequence distribution with 13C NMR.

Authors:  Zhe Zhou; Rainer Kümmerle; Xiaohua Qiu; David Redwine; Rongjuan Cong; Angela Taha; Dan Baugh; Bill Winniford
Journal:  J Magn Reson       Date:  2007-05-23       Impact factor: 2.229

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  1 in total

1.  Elucidating the mechanisms underlying protein conformational switching using NMR spectroscopy.

Authors:  Shefali Jain; Ashok Sekhar
Journal:  J Magn Reson Open       Date:  2022-06
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