Literature DB >> 32341533

Reconstitution of translesion synthesis reveals a mechanism of eukaryotic DNA replication restart.

Thomas A Guilliam1, Joseph T P Yeeles2.   

Abstract

Leading-strand template aberrations cause helicase-polymerase uncoupling and impede replication fork progression, but the details of how uncoupled forks are restarted remain uncertain. Using purified proteins from Saccharomyces cerevisiae, we have reconstituted translesion synthesis (TLS)-mediated restart of a eukaryotic replisome following collision with a cyclobutane pyrimidine dimer. We find that TLS functions 'on the fly' to promote resumption of rapid replication fork rates, despite lesion bypass occurring uncoupled from the Cdc45-MCM-GINS (CMG) helicase. Surprisingly, the main lagging-strand polymerase, Pol δ, binds the leading strand upon uncoupling and inhibits TLS. Pol δ is also crucial for efficient recoupling of leading-strand synthesis to CMG following lesion bypass. Proliferating cell nuclear antigen monoubiquitination positively regulates TLS to overcome Pol δ inhibition. We reveal that these mechanisms of negative and positive regulation also operate on the lagging strand. Our observations have implications for both fork restart and the division of labor during leading-strand synthesis generally.

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Year:  2020        PMID: 32341533      PMCID: PMC7116498          DOI: 10.1038/s41594-020-0418-4

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  53 in total

1.  Controlling the subcellular localization of DNA polymerases iota and eta via interactions with ubiquitin.

Authors:  Brian S Plosky; Antonio E Vidal; Antonio R Fernández de Henestrosa; Mary P McLenigan; John P McDonald; Samantha Mead; Roger Woodgate
Journal:  EMBO J       Date:  2006-06-08       Impact factor: 11.598

Review 2.  The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases.

Authors:  Scott D McCulloch; Thomas A Kunkel
Journal:  Cell Res       Date:  2008-01       Impact factor: 25.617

3.  Ubiquitinated proliferating cell nuclear antigen activates translesion DNA polymerases eta and REV1.

Authors:  Parie Garg; Peter M Burgers
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-12       Impact factor: 11.205

Review 4.  Lesion Bypass and the Reactivation of Stalled Replication Forks.

Authors:  Kenneth J Marians
Journal:  Annu Rev Biochem       Date:  2018-01-03       Impact factor: 23.643

5.  Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis.

Authors:  Marzena Bienko; Catherine M Green; Nicola Crosetto; Fabian Rudolf; Grzegorz Zapart; Barry Coull; Patricia Kannouche; Gerhard Wider; Matthias Peter; Alan R Lehmann; Kay Hofmann; Ivan Dikic
Journal:  Science       Date:  2005-12-16       Impact factor: 47.728

6.  Ubiquitylation of yeast proliferating cell nuclear antigen and its implications for translesion DNA synthesis.

Authors:  Lajos Haracska; Ildiko Unk; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-12       Impact factor: 11.205

Review 7.  Causes and consequences of replication stress.

Authors:  Michelle K Zeman; Karlene A Cimprich
Journal:  Nat Cell Biol       Date:  2014-01       Impact factor: 28.824

8.  Yeast DNA polymerase epsilon participates in leading-strand DNA replication.

Authors:  Zachary F Pursell; Isabelle Isoz; Else-Britt Lundström; Erik Johansson; Thomas A Kunkel
Journal:  Science       Date:  2007-07-06       Impact factor: 47.728

Review 9.  Y-family DNA polymerases and their role in tolerance of cellular DNA damage.

Authors:  Julian E Sale; Alan R Lehmann; Roger Woodgate
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-23       Impact factor: 94.444

10.  A global profile of replicative polymerase usage.

Authors:  Yasukazu Daigaku; Andrea Keszthelyi; Carolin A Müller; Izumi Miyabe; Tony Brooks; Renata Retkute; Mike Hubank; Conrad A Nieduszynski; Antony M Carr
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

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  23 in total

Review 1.  Time for remodeling: SNF2-family DNA translocases in replication fork metabolism and human disease.

Authors:  Sarah A Joseph; Angelo Taglialatela; Giuseppe Leuzzi; Jen-Wei Huang; Raquel Cuella-Martin; Alberto Ciccia
Journal:  DNA Repair (Amst)       Date:  2020-08-15

Review 2.  Ribonucleotide incorporation into DNA during DNA replication and its consequences.

Authors:  Zhi-Xiong Zhou; Jessica S Williams; Scott A Lujan; Thomas A Kunkel
Journal:  Crit Rev Biochem Mol Biol       Date:  2021-01-18       Impact factor: 8.250

3.  How asymmetric DNA replication achieves symmetrical fidelity.

Authors:  Zhi-Xiong Zhou; Scott A Lujan; Adam B Burkholder; Jordan St Charles; Joseph Dahl; Corinne E Farrell; Jessica S Williams; Thomas A Kunkel
Journal:  Nat Struct Mol Biol       Date:  2021-12-09       Impact factor: 15.369

4.  Revisiting the BRCA-pathway through the lens of replication gap suppression: "Gaps determine therapy response in BRCA mutant cancer".

Authors:  Sharon B Cantor
Journal:  DNA Repair (Amst)       Date:  2021-08-13

5.  Molecular mechanisms of eukaryotic origin initiation, replication fork progression, and chromatin maintenance.

Authors:  Zuanning Yuan; Huilin Li
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

Review 6.  REV7 directs DNA repair pathway choice.

Authors:  Connor S Clairmont; Alan D D'Andrea
Journal:  Trends Cell Biol       Date:  2021-06-16       Impact factor: 20.808

7.  Compensation for the absence of the catalytically active half of DNA polymerase ε in yeast by positively selected mutations in CDC28.

Authors:  Elena I Stepchenkova; Anna S Zhuk; Jian Cui; Elena R Tarakhovskaya; Stephanie R Barbari; Polina V Shcherbakova; Dmitrii E Polev; Roman Fedorov; Eugenia Poliakov; Igor B Rogozin; Artem G Lada; Youri I Pavlov
Journal:  Genetics       Date:  2021-06-24       Impact factor: 4.562

8.  The emerging determinants of replication fork stability.

Authors:  Tanay Thakar; George-Lucian Moldovan
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

9.  Determination of DNA lesion bypass using a ChIP-based assay.

Authors:  Dayong Wu; Ananya Banerjee; Shurui Cai; Na Li; Chunhua Han; Xuetao Bai; Junran Zhang; Qi-En Wang
Journal:  DNA Repair (Amst)       Date:  2021-09-22

Review 10.  Mechanisms for Maintaining Eukaryotic Replisome Progression in the Presence of DNA Damage.

Authors:  Thomas A Guilliam
Journal:  Front Mol Biosci       Date:  2021-07-06
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