Literature DB >> 28320902

A global optimization perspective on molecular clusters.

J M C Marques1, F B Pereira2,3, J L Llanio-Trujillo4, P E Abreu4, M Albertí5, A Aguilar5, F Pirani6, M Bartolomei7.   

Abstract

Although there is a long history behind the idea of chemical structure, this is a key concept that continues to challenge chemists. Chemical structure is fundamental to understanding most of the properties of matter and its knowledge for complex systems requires the use of state-of-the-art techniques, either experimental or theoretical. From the theoretical view point, one needs to establish the interaction potential among the atoms or molecules of the system, which contains all the information regarding the energy landscape, and employ optimization algorithms to discover the relevant stationary points. In particular, global optimization methods are of major importance to search for the low-energy structures of molecular aggregates. We review the application of global optimization techniques to several molecular clusters; some new results are also reported. Emphasis is given to evolutionary algorithms and their application in the study of the microsolvation of alkali-metal and Ca2+ ions with various types of solvents.This article is part of the themed issue 'Theoretical and computational studies of non-equilibrium and non-statistical dynamics in the gas phase, in the condensed phase and at interfaces'.
© 2017 The Author(s).

Entities:  

Keywords:  calculations; evolutionary algorithms; microsolvation; molecular clusters; molecular dynamics; structure optimization

Year:  2017        PMID: 28320902      PMCID: PMC5360898          DOI: 10.1098/rsta.2016.0198

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  30 in total

1.  Infrared spectroscopy of size-selected water and methanol clusters.

Authors:  U Buck; F Huisken
Journal:  Chem Rev       Date:  2000-11-08       Impact factor: 60.622

2.  Dodecahedral clathrate structures and magic numbers in alkali cation microhydration clusters.

Authors:  Franziska Schulz; Bernd Hartke
Journal:  Chemphyschem       Date:  2002-01-18       Impact factor: 3.102

3.  Structures, stability, vibration entropy and IR spectra of hydrated calcium ion clusters [Ca(H(2)O)(n)](2+) (n = 1-20, 27): a systematic investigation by density functional theory.

Authors:  X L Lei; B C Pan
Journal:  J Phys Chem A       Date:  2010-07-22       Impact factor: 2.781

4.  Basis set exchange: a community database for computational sciences.

Authors:  Karen L Schuchardt; Brett T Didier; Todd Elsethagen; Lisong Sun; Vidhya Gurumoorthi; Jared Chase; Jun Li; Theresa L Windus
Journal:  J Chem Inf Model       Date:  2007-04-12       Impact factor: 4.956

5.  Structural characterization of the (methanol)4 potential energy surface.

Authors:  Jorge David; Doris Guerra; Albeiro Restrepo
Journal:  J Phys Chem A       Date:  2009-09-24       Impact factor: 2.781

6.  Pool-BCGA: a parallelised generation-free genetic algorithm for the ab initio global optimisation of nanoalloy clusters.

Authors:  A Shayeghi; D Götz; J B A Davis; R Schäfer; R L Johnston
Journal:  Phys Chem Chem Phys       Date:  2014-12-08       Impact factor: 3.676

7.  A size resolved investigation of large water clusters.

Authors:  Udo Buck; Christoph C Pradzynski; Thomas Zeuch; Johannes M Dieterich; Bernd Hartke
Journal:  Phys Chem Chem Phys       Date:  2014-03-07       Impact factor: 3.676

8.  A Density Functional Study of Methanol Clusters.

Authors:  Susan L Boyd; Russell J Boyd
Journal:  J Chem Theory Comput       Date:  2007-01       Impact factor: 6.006

9.  Global optimization of clusters of rigid molecules using the artificial bee colony algorithm.

Authors:  Jun Zhang; Michael Dolg
Journal:  Phys Chem Chem Phys       Date:  2016-01-28       Impact factor: 3.676

10.  Methanol clusters (CH3OH)n: putative global minimum-energy structures from model potentials and dispersion-corrected density functional theory.

Authors:  Sergey Kazachenko; Satya Bulusu; Ajit J Thakkar
Journal:  J Chem Phys       Date:  2013-06-14       Impact factor: 3.488

View more
  1 in total

Review 1.  Leading Interaction Components in the Structure and Reactivity of Noble Gases Compounds.

Authors:  Francesca Nunzi; Giacomo Pannacci; Francesco Tarantelli; Leonardo Belpassi; David Cappelletti; Stefano Falcinelli; Fernando Pirani
Journal:  Molecules       Date:  2020-05-20       Impact factor: 4.411

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.