Literature DB >> 26738568

Global optimization of clusters of rigid molecules using the artificial bee colony algorithm.

Jun Zhang1, Michael Dolg1.   

Abstract

The global optimization of molecular clusters is an important topic encountered in many fields of chemistry. In our previous work (Phys. Chem. Chem. Phys., 2015, 17, 24173), we successfully applied the recently introduced artificial bee colony (ABC) algorithm to the global optimization of atomic clusters and introduced the corresponding software "ABCluster". In the present work, ABCluster was extended to the optimization of clusters of rigid molecules. Here "rigid" means that all internal degrees of freedom of the constituent molecules are frozen. The algorithm was benchmarked by TIP4P water clusters (H2O)N (N ≤ 20), for which all global minima were successfully located. It was further applied to various clusters of different chemical nature: 10 microhydration clusters, 4 methanol microsolvation clusters, 4 nonpolar clusters and 2 ion-aromatic clusters. In all the cases we obtained results consistent with previous experimental or theoretical studies.

Entities:  

Year:  2016        PMID: 26738568     DOI: 10.1039/c5cp06313b

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  18 in total

1.  Unexpected quenching effect on new particle formation from the atmospheric reaction of methanol with SO3.

Authors:  Ling Liu; Jie Zhong; Hanna Vehkamäki; Theo Kurtén; Lin Du; Xiuhui Zhang; Joseph S Francisco; Xiao Cheng Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-25       Impact factor: 11.205

Review 2.  A global optimization perspective on molecular clusters.

Authors:  J M C Marques; F B Pereira; J L Llanio-Trujillo; P E Abreu; M Albertí; A Aguilar; F Pirani; M Bartolomei
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-04-28       Impact factor: 4.226

3.  Rapid sulfuric acid-dimethylamine nucleation enhanced by nitric acid in polluted regions.

Authors:  Ling Liu; Fangqun Yu; Lin Du; Zhi Yang; Joseph S Francisco; Xiuhui Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-31       Impact factor: 11.205

4.  Experimental and Theoretical Study on the Enhancement of Alkanolamines on Sulfuric Acid Nucleation.

Authors:  Sandra K W Fomete; Jack S Johnson; Nanna Myllys; Coty N Jen
Journal:  J Phys Chem A       Date:  2022-06-21       Impact factor: 2.944

5.  σ-Aromaticity in planar pentacoordinate aluminium and gallium clusters.

Authors:  Amlan J Kalita; Kangkan Sarmah; Farnaz Yashmin; Ritam R Borah; Indrani Baruah; Rinu P Deka; Ankur K Guha
Journal:  Sci Rep       Date:  2022-06-16       Impact factor: 4.996

6.  Structural and electronic properties of nanosize semiconductor HfSin0/-/2- (n = 6-16) material: a double-hybrid density functional theory investigation.

Authors:  Caixia Dong; Jucai Yang; Jun Lu
Journal:  J Mol Model       Date:  2020-03-26       Impact factor: 1.810

7.  Atmospheric implication of synergy in methanesulfonic acid-base trimers: a theoretical investigation.

Authors:  Dongping Chen; Weina Wang; Danfeng Li; Wenliang Wang
Journal:  RSC Adv       Date:  2020-01-31       Impact factor: 4.036

8.  Heterogeneous Nucleation of Butanol on NaCl: A Computational Study of Temperature, Humidity, Seed Charge, and Seed Size Effects.

Authors:  Antti Toropainen; Juha Kangasluoma; Theo Kurtén; Hanna Vehkamäki; Fatemeh Keshavarz; Jakub Kubečka
Journal:  J Phys Chem A       Date:  2021-03-31       Impact factor: 2.781

9.  Thermochemical Properties and Growth Mechanism of the Ag-Doped Germanium Clusters, AgGe n λ with n = 1-13 and λ = -1, 0, and +1.

Authors:  Bin Liu; Jucai Yang
Journal:  ACS Omega       Date:  2021-03-31

10.  QTAIM analysis dataset for non-covalent interactions in furan clusters.

Authors:  Alhadji Malloum; Jeanet Conradie
Journal:  Data Brief       Date:  2021-12-24
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