Literature DB >> 28289886

The pivotal role of small non-coding RNAs in the regulation of seed development.

Andreia S Rodrigues1,2, Célia M Miguel3,4,5.   

Abstract

Seeds represent a crucial stage of the seed plants life cycle. It is during seed development that the foundations of the future plant body, and the ability to give rise to a new plant capable of growing under sometimes adverse environmental conditions, are established. Small non-coding RNAs are major regulators of gene expression both at the post-transcriptional and transcriptional levels and, not surprisingly, these elements play major roles in seed development and germination. We review here the current knowledge about small RNA expression and functions in seed development, going from the morphogenesis phase comprehending embryo development and patterning, to the several steps of the maturation phase, ending in the transition to the germination. A special focus is given to the small RNAs for which functional studies have been conducted and their participation in regulatory networks operating in seeds. Many challenges remain ahead for dissecting the complex small RNA landscape in seeds, but this is a highly relevant issue in plant biology and advances in this area will most certainly impact plant breeding.

Entities:  

Keywords:  Embryogenesis; Functional characterization; Regulatory networks; Seed development; Small RNA profiling

Mesh:

Substances:

Year:  2017        PMID: 28289886     DOI: 10.1007/s00299-017-2120-5

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  103 in total

1.  Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis.

Authors:  Junhong Zhang; Shougong Zhang; Suying Han; Tao Wu; Xinmin Li; Wanfeng Li; Liwang Qi
Journal:  Planta       Date:  2012-04-13       Impact factor: 4.116

2.  Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching.

Authors:  Yu-Chan Zhang; Yang Yu; Cong-Ying Wang; Ze-Yuan Li; Qing Liu; Jie Xu; Jian-You Liao; Xiao-Jing Wang; Liang-Hu Qu; Fan Chen; Peiyong Xin; Cunyu Yan; Jinfang Chu; Hong-Qing Li; Yue-Qin Chen
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

Review 3.  Seed-development programs: a systems biology-based comparison between dicots and monocots.

Authors:  Nese Sreenivasulu; Ulrich Wobus
Journal:  Annu Rev Plant Biol       Date:  2013-02-28       Impact factor: 26.379

4.  Genetic control of plant development by overriding a geometric division rule.

Authors:  Saiko Yoshida; Pierre Barbier de Reuille; Brendan Lane; George W Bassel; Przemyslaw Prusinkiewicz; Richard S Smith; Dolf Weijers
Journal:  Dev Cell       Date:  2014-03-27       Impact factor: 12.270

Review 5.  MicroRNA gene regulation cascades during early stages of plant development.

Authors:  Hiroyuki Nonogaki
Journal:  Plant Cell Physiol       Date:  2010-10-11       Impact factor: 4.927

6.  Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in glycine max seed coats.

Authors:  Jigyasa H Tuteja; Gracia Zabala; Kranthi Varala; Matthew Hudson; Lila O Vodkin
Journal:  Plant Cell       Date:  2009-10-09       Impact factor: 11.277

7.  The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.

Authors:  Zhicheng Dong; Meng-Hsuan Han; Nina Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

8.  Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa.

Authors:  Ryan D Morin; Gozde Aksay; Elena Dolgosheina; H Alexander Ebhardt; Vincent Magrini; Elaine R Mardis; S Cenk Sahinalp; Peter J Unrau
Journal:  Genome Res       Date:  2008-03-06       Impact factor: 9.043

9.  MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects.

Authors:  Robert S Allen; Junyan Li; Maria M Alonso-Peral; Rosemary G White; Frank Gubler; Anthony A Millar
Journal:  Silence       Date:  2010-10-28

10.  Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis.

Authors:  Xiyan Yang; Lichen Wang; Daojun Yuan; Keith Lindsey; Xianlong Zhang
Journal:  J Exp Bot       Date:  2013-02-04       Impact factor: 6.992

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  9 in total

1.  Systems biology of seeds: deciphering the molecular mechanisms of seed storage, dormancy and onset of germination.

Authors:  Nese Sreenivasulu
Journal:  Plant Cell Rep       Date:  2017-04-18       Impact factor: 4.570

Review 2.  Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development.

Authors:  L Lepiniec; M Devic; T J Roscoe; D Bouyer; D-X Zhou; C Boulard; S Baud; B Dubreucq
Journal:  Plant Reprod       Date:  2018-05-24       Impact factor: 3.767

Review 3.  Systems biology of seeds: decoding the secret of biochemical seed factories for nutritional security.

Authors:  Anil Kumar; Rajesh Kumar Pathak; Aranyadip Gayen; Supriya Gupta; Manoj Singh; Charu Lata; Himanshu Sharma; Joy Kumar Roy; Sanjay Mohan Gupta
Journal:  3 Biotech       Date:  2018-10-24       Impact factor: 2.406

4.  Integrated microRNA and transcriptome profiling reveal key miRNA-mRNA interaction pairs associated with seed development in Tartary buckwheat (Fagopyrum tataricum).

Authors:  Hongyou Li; Hengling Meng; Xiaoqian Sun; Jiao Deng; Taoxiong Shi; Liwei Zhu; Qiuyu Lv; Qingfu Chen
Journal:  BMC Plant Biol       Date:  2021-03-09       Impact factor: 4.215

5.  Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues.

Authors:  Klaas Vandepoele; Tina Kyndt; Anikó Meijer; Tim De Meyer
Journal:  BMC Genomics       Date:  2022-01-11       Impact factor: 3.969

6.  MicroRNA and Putative Target Discoveries in Chrysanthemum Polyploidy Breeding.

Authors:  Fengjiao Zhang; Jingya Zhao; Sujuan Xu; Weimin Fang; Fadi Chen; Nianjun Teng
Journal:  Int J Genomics       Date:  2017-12-13       Impact factor: 2.326

7.  Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos.

Authors:  Andreia S Rodrigues; Inês Chaves; Bruno Vasques Costa; Yao-Cheng Lin; Susana Lopes; Ana Milhinhos; Yves Van de Peer; Célia M Miguel
Journal:  Sci Rep       Date:  2019-08-05       Impact factor: 4.379

8.  Functional and morphological evolution in gymnosperms: A portrait of implicated gene families.

Authors:  Amanda R De La Torre; Anthony Piot; Bobin Liu; Benjamin Wilhite; Matthew Weiss; Ilga Porth
Journal:  Evol Appl       Date:  2019-07-21       Impact factor: 5.183

Review 9.  Small Non-Coding RNAs at the Crossroads of Regulatory Pathways Controlling Somatic Embryogenesis in Seed Plants.

Authors:  Ana Alves; Daniela Cordeiro; Sandra Correia; Célia Miguel
Journal:  Plants (Basel)       Date:  2021-03-09
  9 in total

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