Literature DB >> 30370201

Systems biology of seeds: decoding the secret of biochemical seed factories for nutritional security.

Anil Kumar1,2, Rajesh Kumar Pathak2,3, Aranyadip Gayen2, Supriya Gupta2, Manoj Singh2, Charu Lata4, Himanshu Sharma5, Joy Kumar Roy5, Sanjay Mohan Gupta6.   

Abstract

Seeds serve as biochemical factories of nutrition, processing, bio-energy and storage related important bio-molecules and act as a delivery system to transmit the genetic information to the next generation. The research pertaining towards delineating the complex system of regulation of genes and pathways related to seed biology and nutrient partitioning is still under infancy. To understand these, it is important to know the genes and pathway(s) involved in the homeostasis of bio-molecules. In recent past with the advent and advancement of modern tools of genomics and genetic engineering, multi-layered 'omics' approaches and high-throughput platforms are being used to discern the genes and proteins involved in various metabolic, and signaling pathways and their regulations for understanding the molecular genetics of biosynthesis and homeostasis of bio-molecules. This can be possible by exploring systems biology approaches via the integration of omics data for understanding the intricacy of seed development and nutrient partitioning. These information can be exploited for the improvement of biologically important chemicals for large-scale production of nutrients and nutraceuticals through pathway engineering and biotechnology. This review article thus describes different omics tools and other branches that are merged to build the most attractive area of research towards establishing the seeds as biochemical factories for human health and nutrition.

Entities:  

Keywords:  Bio-fortification; Nutraceuticals; Nutrients partitioning in seeds; Seed biology; Systems biology

Year:  2018        PMID: 30370201      PMCID: PMC6200710          DOI: 10.1007/s13205-018-1483-9

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  99 in total

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2.  Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching.

Authors:  Yu-Chan Zhang; Yang Yu; Cong-Ying Wang; Ze-Yuan Li; Qing Liu; Jie Xu; Jian-You Liao; Xiao-Jing Wang; Liang-Hu Qu; Fan Chen; Peiyong Xin; Cunyu Yan; Jinfang Chu; Hong-Qing Li; Yue-Qin Chen
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

Review 3.  Seed-development programs: a systems biology-based comparison between dicots and monocots.

Authors:  Nese Sreenivasulu; Ulrich Wobus
Journal:  Annu Rev Plant Biol       Date:  2013-02-28       Impact factor: 26.379

4.  The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development.

Authors:  C S Hardtke; T Berleth
Journal:  EMBO J       Date:  1998-03-02       Impact factor: 11.598

Review 5.  Genomics reveals new landscapes for crop improvement.

Authors:  Michael W Bevan; Cristobal Uauy
Journal:  Genome Biol       Date:  2013-06-24       Impact factor: 13.583

Review 6.  Lectin engineering, a molecular evolutionary approach to expanding the lectin utilities.

Authors:  Dan Hu; Hiroaki Tateno; Jun Hirabayashi
Journal:  Molecules       Date:  2015-04-27       Impact factor: 4.411

7.  Modeling of the MAPK machinery activation in response to various abiotic and biotic stresses in plants by a system biology approach.

Authors:  Rajesh Kumar Pathak; Gohar Taj; Dinesh Pandey; Sandeep Arora; Anil Kumar
Journal:  Bioinformation       Date:  2013-05-25

8.  Agronomic and Seed Quality Traits Dissected by Genome-Wide Association Mapping in Brassica napus.

Authors:  Niklas Körber; Anja Bus; Jinquan Li; Isobel A P Parkin; Benjamin Wittkop; Rod J Snowdon; Benjamin Stich
Journal:  Front Plant Sci       Date:  2016-03-31       Impact factor: 5.753

Review 9.  Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement.

Authors:  Abirami Ramalingam; Himabindu Kudapa; Lekha T Pazhamala; Wolfram Weckwerth; Rajeev K Varshney
Journal:  Front Plant Sci       Date:  2015-12-24       Impact factor: 5.753

10.  Transcriptomic Analysis of Seed Coats in Yellow-Seeded Brassica napus Reveals Novel Genes That Influence Proanthocyanidin Biosynthesis.

Authors:  Meiyan Hong; Kaining Hu; Tiantian Tian; Xia Li; Li Chen; Yan Zhang; Bin Yi; Jing Wen; Chaozhi Ma; Jinxiong Shen; Tingdong Fu; Jinxing Tu
Journal:  Front Plant Sci       Date:  2017-10-05       Impact factor: 5.753

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