Literature DB >> 28421280

Systems biology of seeds: deciphering the molecular mechanisms of seed storage, dormancy and onset of germination.

Nese Sreenivasulu1.   

Abstract

Seeds are heterogeneous storage reserves with wide array of storage compounds that include various soluble carbohydrates, starch polymer, storage proteins and lipids. These stored reserves comprise 70% of the world's caloric intake in the form of food and animal feed produced through sustainable agriculture, which contributes to food and nutritional security. Seed systems biology remains an enigmatic subject in understanding seed storage processes, maturation and pre-germinative metabolism. The reviews and research articles covered in this special issue of Plant Cell Reports highlight recent advances made in the area of seed biology that cover various systems biology applications such as gene regulatory networks, metabolomics, epigenetics and the role of micro-RNA in seed development.

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Year:  2017        PMID: 28421280     DOI: 10.1007/s00299-017-2135-y

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  24 in total

Review 1.  Arabidopsis seed secrets unravelled after a decade of genetic and omics-driven research.

Authors:  Helen North; Sébastien Baud; Isabelle Debeaujon; Christian Dubos; Bertrand Dubreucq; Philippe Grappin; Marc Jullien; Loïc Lepiniec; Annie Marion-Poll; Martine Miquel; Loïc Rajjou; Jean-Marc Routaboul; Michel Caboche
Journal:  Plant J       Date:  2010-03       Impact factor: 6.417

2.  Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors.

Authors:  Brandon H Le; Chen Cheng; Anhthu Q Bui; Javier A Wagmaister; Kelli F Henry; Julie Pelletier; Linda Kwong; Mark Belmonte; Ryan Kirkbride; Steve Horvath; Gary N Drews; Robert L Fischer; Jack K Okamuro; John J Harada; Robert B Goldberg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

3.  Genome-Wide Mapping of Targets of Maize Histone Deacetylase HDA101 Reveals Its Function and Regulatory Mechanism during Seed Development.

Authors:  Hua Yang; Xinye Liu; Mingming Xin; Jinkun Du; Zhaorong Hu; HuiRu Peng; Vincenzo Rossi; Qixin Sun; Zhongfu Ni; Yingyin Yao
Journal:  Plant Cell       Date:  2016-02-23       Impact factor: 11.277

4.  Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed.

Authors:  Mark F Belmonte; Ryan C Kirkbride; Sandra L Stone; Julie M Pelletier; Anhthu Q Bui; Edward C Yeung; Meryl Hashimoto; Jiong Fei; Corey M Harada; Matthew D Munoz; Brandon H Le; Gary N Drews; Siobhan M Brady; Robert B Goldberg; John J Harada
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-14       Impact factor: 11.205

Review 5.  Seed-development programs: a systems biology-based comparison between dicots and monocots.

Authors:  Nese Sreenivasulu; Ulrich Wobus
Journal:  Annu Rev Plant Biol       Date:  2013-02-28       Impact factor: 26.379

6.  Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA- regulated maturation in developing barley seeds.

Authors:  Nese Sreenivasulu; Volodymyr Radchuk; Marc Strickert; Otto Miersch; Winfriede Weschke; Ulrich Wobus
Journal:  Plant J       Date:  2006-06-08       Impact factor: 6.417

Review 7.  The pivotal role of abscisic acid signaling during transition from seed maturation to germination.

Authors:  An Yan; Zhong Chen
Journal:  Plant Cell Rep       Date:  2016-11-23       Impact factor: 4.570

8.  Seed architecture shapes embryo metabolism in oilseed rape.

Authors:  Ljudmilla Borisjuk; Thomas Neuberger; Jörg Schwender; Nicolas Heinzel; Stephanie Sunderhaus; Johannes Fuchs; Jordan O Hay; Henning Tschiersch; Hans-Peter Braun; Peter Denolf; Bart Lambert; Peter M Jakob; Hardy Rolletschek
Journal:  Plant Cell       Date:  2013-05-24       Impact factor: 11.277

9.  CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice.

Authors:  Xiaojia Yin; Akshaya K Biswal; Jacqueline Dionora; Kristel M Perdigon; Christian P Balahadia; Shamik Mazumdar; Caspar Chater; Hsiang-Chun Lin; Robert A Coe; Tobias Kretzschmar; Julie E Gray; Paul W Quick; Anindya Bandyopadhyay
Journal:  Plant Cell Rep       Date:  2017-03-27       Impact factor: 4.570

10.  The relative contribution of genes operating in the S-methylmethionine cycle to methionine metabolism in Arabidopsis seeds.

Authors:  Hagai Cohen; Asaf Salmon; Zipora Tietel; Yael Hacham; Rachel Amir
Journal:  Plant Cell Rep       Date:  2017-03-13       Impact factor: 4.570

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  2 in total

Review 1.  Systems biology of seeds: decoding the secret of biochemical seed factories for nutritional security.

Authors:  Anil Kumar; Rajesh Kumar Pathak; Aranyadip Gayen; Supriya Gupta; Manoj Singh; Charu Lata; Himanshu Sharma; Joy Kumar Roy; Sanjay Mohan Gupta
Journal:  3 Biotech       Date:  2018-10-24       Impact factor: 2.406

Review 2.  Transcriptomics View over the Germination Landscape in Biofortified Rice.

Authors:  Conrado Jr Dueñas; Inez Slamet-Loedin; Anca Macovei
Journal:  Genes (Basel)       Date:  2021-12-18       Impact factor: 4.096

  2 in total

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