Literature DB >> 28269878

CMedTEX: A Rule-based Temporal Expression Extraction and Normalization System for Chinese Clinical Notes.

Zengjian Liu1, Buzhou Tang1, Xiaolong Wang1, Qingcai Chen1, Haodi Li1, Junzhao Bu1, Jingzhi Jiang1, Qiwen Deng2, Suisong Zhu2.   

Abstract

Time is an important aspect of information and is very useful for information utilization. The goal of this study was to analyze the challenges of temporal expression (TE) extraction and normalization in Chinese clinical notes by assessing the performance of a rule-based system developed by us on a manually annotated corpus (including 1,778 clinical notes of 281 hospitalized patients). In order to develop system conveniently, we divided TEs into three categories: direct, indirect and uncertain TEs, and designed different rules for each category of them. Evaluation on the independent test set shows that our system achieves an F-score of93.40% on TE extraction, and an accuracy of 92.58% on TE normalization under "exact-match" criterion. Compared with HeidelTime for Chinese newswire text, our system is much better, indicating that it is necessary to develop a specific TE extraction and normalization system for Chinese clinical notes because of domain difference.

Entities:  

Mesh:

Year:  2017        PMID: 28269878      PMCID: PMC5333232     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  8 in total

1.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

2.  CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives.

Authors:  Cui Tao; Wei-Qi Wei; Harold R Solbrig; Guergana Savova; Christopher G Chute
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

3.  An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge.

Authors:  Yan Xu; Yining Wang; Tianren Liu; Junichi Tsujii; Eric I-Chao Chang
Journal:  J Am Med Inform Assoc       Date:  2013-03-06       Impact factor: 4.497

4.  Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification.

Authors:  Sunghwan Sohn; Kavishwar B Wagholikar; Dingcheng Li; Siddhartha R Jonnalagadda; Cui Tao; Ravikumar Komandur Elayavilli; Hongfang Liu
Journal:  J Am Med Inform Assoc       Date:  2013-04-04       Impact factor: 4.497

5.  A general natural-language text processor for clinical radiology.

Authors:  C Friedman; P O Alderson; J H Austin; J J Cimino; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 Mar-Apr       Impact factor: 4.497

6.  Annotating temporal information in clinical narratives.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Biomed Inform       Date:  2013-07-19       Impact factor: 6.317

Review 7.  Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2013-04-05       Impact factor: 4.497

8.  CNTRO 2.0: A Harmonized Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives.

Authors:  Cui Tao; Harold R Solbrig; Christopher G Chute
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2011-03-07
  8 in total
  2 in total

1.  Constructing fine-grained entity recognition corpora based on clinical records of traditional Chinese medicine.

Authors:  Tingting Zhang; Yaqiang Wang; Xiaofeng Wang; Yafei Yang; Ying Ye
Journal:  BMC Med Inform Decis Mak       Date:  2020-04-06       Impact factor: 2.796

2.  Temporal Expression Classification and Normalization From Chinese Narrative Clinical Texts: Pattern Learning Approach.

Authors:  Xiaoyi Pan; Boyu Chen; Heng Weng; Yongyi Gong; Yingying Qu
Journal:  JMIR Med Inform       Date:  2020-07-27
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.