Literature DB >> 21347086

CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives.

Cui Tao1, Wei-Qi Wei, Harold R Solbrig, Guergana Savova, Christopher G Chute.   

Abstract

Using Semantic-Web specifications to represent temporal information in clinical narratives is an important step for temporal reasoning and answering time-oriented queries. Existing temporal models are either not compatible with the powerful reasoning tools developed for the Semantic Web, or designed only for structured clinical data and therefore are not ready to be applied on natural-language-based clinical narrative reports directly. We have developed a Semantic-Web ontology which is called Clinical Narrative Temporal Relation ontology. Using this ontology, temporal information in clinical narratives can be represented as RDF (Resource Description Framework) triples. More temporal information and relations can then be inferred by Semantic-Web based reasoning tools. Experimental results show that this ontology can represent temporal information in real clinical narratives successfully.

Mesh:

Year:  2010        PMID: 21347086      PMCID: PMC3041418     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  3 in total

1.  A temporal constraint structure for extracting temporal information from clinical narrative.

Authors:  Li Zhou; Genevieve B Melton; Simon Parsons; George Hripcsak
Journal:  J Biomed Inform       Date:  2005-08-29       Impact factor: 6.317

2.  The evaluation of a temporal reasoning system in processing clinical discharge summaries.

Authors:  Li Zhou; Simon Parsons; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

3.  Towards temporal relation discovery from the clinical narrative.

Authors:  Guergana Savova; Steven Bethard; Will Styler; James Martin; Martha Palmer; James Masanz; Wayne Ward
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14
  3 in total
  25 in total

1.  Extracting temporal constraints from clinical research eligibility criteria using conditional random fields.

Authors:  Zhihui Luo; Stephen B Johnson; Albert M Lai; Chunhua Weng
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Application of a temporal reasoning framework tool in analysis of medical device adverse events.

Authors:  Kimberly K Clark; Deepak K Sharma; Christopher G Chute; Cui Tao
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

3.  Normalization of relative and incomplete temporal expressions in clinical narratives.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2015-04-12       Impact factor: 4.497

4.  Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events.

Authors:  Fang Li; Jingcheng Du; Yongqun He; Hsing-Yi Song; Mohcine Madkour; Guozheng Rao; Yang Xiang; Yi Luo; Henry W Chen; Sijia Liu; Liwei Wang; Hongfang Liu; Hua Xu; Cui Tao
Journal:  J Am Med Inform Assoc       Date:  2020-07-01       Impact factor: 4.497

5.  CMedTEX: A Rule-based Temporal Expression Extraction and Normalization System for Chinese Clinical Notes.

Authors:  Zengjian Liu; Buzhou Tang; Xiaolong Wang; Qingcai Chen; Haodi Li; Junzhao Bu; Jingzhi Jiang; Qiwen Deng; Suisong Zhu
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

6.  A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.

Authors:  Cui Tao; Guoqian Jiang; Thomas A Oniki; Robert R Freimuth; Qian Zhu; Deepak Sharma; Jyotishman Pathak; Stanley M Huff; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2012-12-25       Impact factor: 4.497

7.  Extracting temporal information from electronic patient records.

Authors:  Min Li; Jon Patrick
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

8.  Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification.

Authors:  Sunghwan Sohn; Kavishwar B Wagholikar; Dingcheng Li; Siddhartha R Jonnalagadda; Cui Tao; Ravikumar Komandur Elayavilli; Hongfang Liu
Journal:  J Am Med Inform Assoc       Date:  2013-04-04       Impact factor: 4.497

Review 9.  Temporal reasoning over clinical text: the state of the art.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2013-05-15       Impact factor: 4.497

10.  Time-related patient data retrieval for the case studies from the pharmacogenomics research network.

Authors:  Qian Zhu; Cui Tao; Ying Ding; Christopher G Chute
Journal:  J Med Syst       Date:  2012-10-18       Impact factor: 4.460

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