Literature DB >> 28263717

NMR-based Stable Isotope Resolved Metabolomics in systems biochemistry.

Andrew N Lane1, Teresa W-M Fan2.   

Abstract

Metabolism is the basic activity of live cells, and monitoring the metabolic state provides a dynamic picture of the cells or tissues, and how they respond to external changes, for in disease or treatment with drugs. NMR is an extremely versatile analytical tool that can be applied to a wide range of biochemical problems. Despite its modest sensitivity its versatility make it an ideal tool for analyzing biochemical dynamics both in vitro and in vivo, especially when coupled with its isotope editing capabilities, from which isotope distributions can be readily determined. These are critical for any analyses of flux in live organisms. This review focuses on the utility of NMR spectroscopy in metabolomics, with an emphasis on NMR applications in stable isotope-enriched tracer research for elucidating biochemical pathways and networks with examples from nucleotide biochemistry. The knowledge gained from this area of research provides a ready link to genomic, epigenomic, transcriptomic, and proteomic information to achieve systems biochemical understanding of living cells and organisms.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Isotope editing; Isotopomer distribution analysis; Stable Isotope Resolved Metabolomics (SIRM)

Mesh:

Substances:

Year:  2017        PMID: 28263717      PMCID: PMC5545158          DOI: 10.1016/j.abb.2017.02.009

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  100 in total

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2.  Profiling thiol metabolites and quantification of cellular glutathione using FT-ICR-MS spectrometry.

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Review 3.  The theory and practice of hyperpolarization in magnetic resonance using parahydrogen.

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Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2012-03-15       Impact factor: 9.795

Review 4.  Applications of NMR spectroscopy to systems biochemistry.

Authors:  Teresa W-M Fan; Andrew N Lane
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-06       Impact factor: 9.795

5.  The use of stable isotope-labeled glycerol and oleic acid to differentiate the hepatic functions of DGAT1 and -2.

Authors:  Jenson Qi; Wensheng Lang; John G Geisler; Ping Wang; Ioanna Petrounia; Selyna Mai; Charles Smith; Hossein Askari; Geoffrey T Struble; Robyn Williams; Sanjay Bhanot; Brett P Monia; Shariff Bayoumy; Eugene Grant; Gary W Caldwell; Matthew J Todd; Yin Liang; Micheal D Gaul; Keith T Demarest; Margery A Connelly
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6.  The metabolic profile of tumors depends on both the responsible genetic lesion and tissue type.

Authors:  Mariia O Yuneva; Teresa W M Fan; Thaddeus D Allen; Richard M Higashi; Dana V Ferraris; Takashi Tsukamoto; José M Matés; Francisco J Alonso; Chunmei Wang; Youngho Seo; Xin Chen; J Michael Bishop
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7.  15N-cholamine--a smart isotope tag for combining NMR- and MS-based metabolite profiling.

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10.  Simultaneous Analysis of Major Coenzymes of Cellular Redox Reactions and Energy Using ex Vivo (1)H NMR Spectroscopy.

Authors:  G A Nagana Gowda; Lauren Abell; Chi Fung Lee; Rong Tian; Daniel Raftery
Journal:  Anal Chem       Date:  2016-04-14       Impact factor: 6.986

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3.  Stable Isotope-Resolved Metabolomics by NMR.

Authors:  Penghui Lin; Andrew N Lane; Teresa W-M Fan
Journal:  Methods Mol Biol       Date:  2019

Review 4.  NMR-based isotope editing, chemoselection and isotopomer distribution analysis in stable isotope resolved metabolomics.

Authors:  Penghui Lin; Teresa W-M Fan; Andrew N Lane
Journal:  Methods       Date:  2022-07-28       Impact factor: 4.647

5.  Applications of Chromatography-Ultra High-Resolution MS for Stable Isotope-Resolved Metabolomics (SIRM) Reconstruction of Metabolic Networks.

Authors:  Qiushi Sun; Teresa W-M Fan; Andrew N Lane; Richard M Higashi
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6.  Targeting Metabolic Cross Talk Between Cancer Cells and Cancer-Associated Fibroblasts.

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7.  NMR Analysis of Carboxylate Isotopomers of 13C-Metabolites by Chemoselective Derivatization with 15N-Cholamine.

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9.  A framework for tracer-based metabolism in mammalian cells by NMR.

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Review 10.  Resolving Metabolic Heterogeneity in Experimental Models of the Tumor Microenvironment from a Stable Isotope Resolved Metabolomics Perspective.

Authors:  Teresa W-M Fan; Richard M Higashi; Yelena Chernayavskaya; Andrew N Lane
Journal:  Metabolites       Date:  2020-06-15
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