Literature DB >> 35908585

NMR-based isotope editing, chemoselection and isotopomer distribution analysis in stable isotope resolved metabolomics.

Penghui Lin1, Teresa W-M Fan2, Andrew N Lane3.   

Abstract

NMR is a very powerful tool for identifying and quantifying compounds within complex mixtures without the need for individual standards or chromatographic separation. Stable Isotope Resolved Metabolomics (or SIRM) is an approach to following the fate of individual atoms from precursors through metabolic transformation, producing an atom-resolved metabolic fate map. However, extracts of cells or tissue give rise to very complex NMR spectra. While multidimensional NMR experiments may partially overcome the spectral overlap problem, additional tools may be needed to determine site-specific isotopomer distributions. NMR is especially powerful by virtue of its isotope editing capabilities using NMR active nuclei such as 13C, 15N, 19F and 31P to select molecules containing just these atoms in a complex mixture, and provide direct information about which atoms are present in identified compounds and their relative abundances. The isotope-editing capability of NMR can also be employed to select for those compounds that have been selectively derivatized with an NMR-active stable isotope at particular functional groups, leading to considerable spectral simplification. Here we review isotope analysis by NMR, and methods of chemoselection both for spectral simplification, and for enhanced isotopomer analysis.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chemoselection; Isotopomer distribution analysis; Stable isotope resolved metabolomics

Mesh:

Substances:

Year:  2022        PMID: 35908585      PMCID: PMC9539636          DOI: 10.1016/j.ymeth.2022.07.014

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   4.647


  67 in total

1.  NMR and MS-based Stable Isotope-Resolved Metabolomics and Applications in Cancer Metabolism.

Authors:  Andrew N Lane; Richard M Higashi; Teresa W-M Fan
Journal:  Trends Analyt Chem       Date:  2018-11-24       Impact factor: 12.296

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3.  D-2-hydroxyglutaric aciduria: case report and biochemical studies.

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4.  Enantiomeric separation and discrimination of 2-hydroxy acids as O-trifluoroacetylated (S)-(+)-3-methyl-2-butyl esters by achiral dual-capillary column gas chromatography.

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Journal:  J Chromatogr A       Date:  2000-03-31       Impact factor: 4.759

5.  Chemical Derivatization and Ultrahigh Resolution and Accurate Mass Spectrometry Strategies for "Shotgun" Lipidome Analysis.

Authors:  Eileen Ryan; Gavin E Reid
Journal:  Acc Chem Res       Date:  2016-08-30       Impact factor: 22.384

6.  Analysis of phosphorylated metabolites in crayfish extracts by two-dimensional 1H-31P NMR heteronuclear total correlation spectroscopy (heteroTOCSY).

Authors:  M J Gradwell; T W Fan; A N Lane
Journal:  Anal Biochem       Date:  1998-10-15       Impact factor: 3.365

7.  Lactate Dehydrogenase C Produces S-2-Hydroxyglutarate in Mouse Testis.

Authors:  Xin Teng; Matthew J Emmett; Mitchell A Lazar; Erwin Goldberg; Joshua D Rabinowitz
Journal:  ACS Chem Biol       Date:  2016-07-07       Impact factor: 5.100

8.  Simultaneous Amino Acid Analysis Based on 19F NMR Using a Modified OPA-Derivatization Method.

Authors:  Takashi Sakamoto; Zhiyong Qiu; Miyu Inagaki; Kenzo Fujimoto
Journal:  Anal Chem       Date:  2019-12-31       Impact factor: 6.986

9.  Measurement of urinary D- and L-2-hydroxyglutarate enantiomers by stable-isotope-dilution liquid chromatography-tandem mass spectrometry after derivatization with diacetyl-L-tartaric anhydride.

Authors:  Eduard A Struys; Erwin E W Jansen; Nanda M Verhoeven; Cornelis Jakobs
Journal:  Clin Chem       Date:  2004-05-27       Impact factor: 8.327

10.  A novel deconvolution method for modeling UDP-N-acetyl-D-glucosamine biosynthetic pathways based on (13)C mass isotopologue profiles under non-steady-state conditions.

Authors:  Hunter N B Moseley; Andrew N Lane; Alex C Belshoff; Richard M Higashi; Teresa W M Fan
Journal:  BMC Biol       Date:  2011-05-31       Impact factor: 7.431

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