Literature DB >> 28256790

Universal Super-Resolution Multiplexing by DNA Exchange.

Florian Schueder1,2, Maximilian T Strauss1,2, David Hoerl3, Joerg Schnitzbauer1,2, Thomas Schlichthaerle1,2, Sebastian Strauss1,2, Peng Yin4, Hartmann Harz3, Heinrich Leonhardt3, Ralf Jungmann1,2.   

Abstract

Super-resolution microscopy allows optical imaging below the classical diffraction limit of light with currently up to 20× higher spatial resolution. However, the detection of multiple targets (multiplexing) is still hard to implement and time-consuming to conduct. Here, we report a straightforward sequential multiplexing approach based on the fast exchange of DNA probes which enables efficient and rapid multiplexed target detection with common super-resolution techniques such as (d)STORM, STED, and SIM. We assay our approach using DNA origami nanostructures to quantitatively assess labeling, imaging, and washing efficiency. We furthermore demonstrate the applicability of our approach by imaging multiple protein targets in fixed cells.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA nanotechnology; SIM; STED; dSTORM; multiplexing

Mesh:

Substances:

Year:  2017        PMID: 28256790      PMCID: PMC5540260          DOI: 10.1002/anie.201611729

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  21 in total

1.  DNA-nanotube-induced alignment of membrane proteins for NMR structure determination.

Authors:  Shawn M Douglas; James J Chou; William M Shih
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

2.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

3.  Isothermal assembly of DNA origami structures using denaturing agents.

Authors:  Ralf Jungmann; Tim Liedl; Thomas L Sobey; William Shih; Friedrich C Simmel
Journal:  J Am Chem Soc       Date:  2008-07-10       Impact factor: 15.419

4.  Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy.

Authors:  S W Hell; J Wichmann
Journal:  Opt Lett       Date:  1994-06-01       Impact factor: 3.776

5.  Simple and aberration-free 4color-STED--multiplexing by transient binding.

Authors:  Susanne Beater; Phil Holzmeister; Birka Lalkens; Philip Tinnefeld
Journal:  Opt Express       Date:  2015-04-06       Impact factor: 3.894

6.  Submicrometre geometrically encoded fluorescent barcodes self-assembled from DNA.

Authors:  Chenxiang Lin; Ralf Jungmann; Andrew M Leifer; Chao Li; Daniel Levner; George M Church; William M Shih; Peng Yin
Journal:  Nat Chem       Date:  2012-10       Impact factor: 24.427

7.  Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue.

Authors:  Michael J Gerdes; Christopher J Sevinsky; Anup Sood; Sudeshna Adak; Musodiq O Bello; Alexander Bordwell; Ali Can; Alex Corwin; Sean Dinn; Robert J Filkins; Denise Hollman; Vidya Kamath; Sireesha Kaanumalle; Kevin Kenny; Melinda Larsen; Michael Lazare; Qing Li; Christina Lowes; Colin C McCulloch; Elizabeth McDonough; Michael C Montalto; Zhengyu Pang; Jens Rittscher; Alberto Santamaria-Pang; Brion D Sarachan; Maximilian L Seel; Antti Seppo; Kashan Shaikh; Yunxia Sui; Jingyu Zhang; Fiona Ginty
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-01       Impact factor: 11.205

8.  Sequential superresolution imaging of multiple targets using a single fluorophore.

Authors:  Christopher C Valley; Sheng Liu; Diane S Lidke; Keith A Lidke
Journal:  PLoS One       Date:  2015-04-10       Impact factor: 3.240

9.  Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT.

Authors:  Ralf Jungmann; Maier S Avendaño; Johannes B Woehrstein; Mingjie Dai; William M Shih; Peng Yin
Journal:  Nat Methods       Date:  2014-02-02       Impact factor: 28.547

10.  Cross-talk-free multi-color STORM imaging using a single fluorophore.

Authors:  Johnny Tam; Guillaume Alan Cordier; Joseph Steven Borbely; Angel Sandoval Álvarez; Melike Lakadamyali
Journal:  PLoS One       Date:  2014-07-07       Impact factor: 3.240

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  28 in total

1.  Extended-Depth 3D Super-Resolution Imaging Using Probe-Refresh STORM.

Authors:  Danying Lin; Lauren A Gagnon; Marco D Howard; Aaron R Halpern; Joshua C Vaughan
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

Review 2.  Strategies to maximize performance in STimulated Emission Depletion (STED) nanoscopy of biological specimens.

Authors:  Wiebke Jahr; Philipp Velicky; Johann Georg Danzl
Journal:  Methods       Date:  2019-07-22       Impact factor: 3.608

3.  Single-molecule localization microscopy.

Authors:  Mickaël Lelek; Melina T Gyparaki; Gerti Beliu; Florian Schueder; Juliette Griffié; Suliana Manley; Ralf Jungmann; Markus Sauer; Melike Lakadamyali; Christophe Zimmer
Journal:  Nat Rev Methods Primers       Date:  2021-06-03

Review 4.  Switchable Fluorophores for Single-Molecule Localization Microscopy.

Authors:  Honglin Li; Joshua C Vaughan
Journal:  Chem Rev       Date:  2018-09-17       Impact factor: 60.622

5.  Rapid Sequential in Situ Multiplexing with DNA Exchange Imaging in Neuronal Cells and Tissues.

Authors:  Yu Wang; Johannes B Woehrstein; Noah Donoghue; Mingjie Dai; Maier S Avendaño; Ron C J Schackmann; Jason J Zoeller; Shan Shan H Wang; Paul W Tillberg; Demian Park; Sylvain W Lapan; Edward S Boyden; Joan S Brugge; Pascal S Kaeser; George M Church; Sarit S Agasti; Ralf Jungmann; Peng Yin
Journal:  Nano Lett       Date:  2017-10-02       Impact factor: 11.189

Review 6.  Completing the canvas: advances and challenges for DNA-PAINT super-resolution imaging.

Authors:  Raman van Wee; Mike Filius; Chirlmin Joo
Journal:  Trends Biochem Sci       Date:  2021-07-08       Impact factor: 13.807

Review 7.  The Growing Development of DNA Nanostructures for Potential Healthcare-Related Applications.

Authors:  Divita Mathur; Igor L Medintz
Journal:  Adv Healthc Mater       Date:  2019-03-07       Impact factor: 11.092

8.  Protein labeling for live cell fluorescence microscopy with a highly photostable renewable signal.

Authors:  Nina G Bozhanova; Mikhail S Baranov; Natalia V Klementieva; Karen S Sarkisyan; Alexey S Gavrikov; Ilia V Yampolsky; Elena V Zagaynova; Sergey A Lukyanov; Konstantin A Lukyanov; Alexander S Mishin
Journal:  Chem Sci       Date:  2017-08-03       Impact factor: 9.825

9.  Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT.

Authors:  Florian Schueder; Juanita Lara-Gutiérrez; Brian J Beliveau; Sinem K Saka; Hiroshi M Sasaki; Johannes B Woehrstein; Maximilian T Strauss; Heinrich Grabmayr; Peng Yin; Ralf Jungmann
Journal:  Nat Commun       Date:  2017-12-12       Impact factor: 14.919

10.  Super-Resolution Microscopy in Studying the Structure and Function of the Cell Nucleus.

Authors:  S S Ryabichko; A N Ibragimov; L A Lebedeva; E N Kozlov; Y V Shidlovskii
Journal:  Acta Naturae       Date:  2017 Oct-Dec       Impact factor: 1.845

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