| Literature DB >> 28245241 |
Katrine Qvortrup1, Jakob F Jensen1, Mikael S Sørensen2, Irene Kouskoumvekaki2, Rasmus K Petersen3, Olivier Taboureau2,4, Karsten Kristiansen3, Thomas E Nielsen1,5.
Abstract
Peroxisome proliferator-activated receptor γ (PPARγ) is a well-known target for thiazolidinedione antidiabetic drugs. In this paper, we present the synthesis and biological evaluation of a series of dihydropyrano[2,3-c]pyrazole derivatives as a novel family of PPARγ partial agonists. Two analogues were found to display high affinity for PPARγ with potencies in the micro molar range. Both of these hits were selective against PPARγ, since no activity was measured when tested against PPARα, PPARδ and RXRα. In addition, a novel modelling approach based on multiple individual flexible alignments was developed for the identification of ligand binding interactions in PPARγ. In combination with cell-based transactivation experiments, the flexible alignment model provides an excellent analytical tool to evaluate and visualize the effect of ligand chemical structure with respect to receptor binding mode and biological activity.Entities:
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Year: 2017 PMID: 28245241 PMCID: PMC5330453 DOI: 10.1371/journal.pone.0162642
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Pharmacologically relevant PPARγ ligands.
Fig 2Reaction pathway for the synthesis of dihydropyrano[2,3-c]pyrazole derivatives 10.
Fig 3Reaction pathway for the synthesis of dihydropyrano[2,3-c]pyrazole 4.
(i) Parafomaldehyde, AcOH, conc. HCl (aq), 70°C, 48 h (37%); (ii) hexamethylenetetramine, EtOH, H2O, reflux, 16 h (37%); (iii) (a) NaBH4, EtOH, (b) HBr, AcOH; (iv) 4-chloro-2-methylphenol. K2CO3, CH3CN, 50°C, 3 h (99%); (v) hydrazine hydrate, EtOH, 0°C to 60°C, 3 h (90%); (vi) malonitrile, Et3N, EtOH, 80°C, 17 min (72%).
Fig 4Chemical and biological data for dihydropyrano[2,3-c]pyrazoles.
Fig 5The ligand 4 presented in the aligned binding mode on CID-10229498.
Fig 6The ligands 4 (orange) and 10ag (green) shown on top of each other from alignment on CID-10229498.
The altered ligand structure induces a relocation of the ligand in the receptor, allowing the phenyl-substituent on the dihydropyrano[2,3-c]pyrazole N1 in 10ag to participate in several stabilizing hydrophobic interactions in the β-sheet regions.