Literature DB >> 28210796

Optogenetic switches for light-controlled gene expression in yeast.

Francisco Salinas1,2, Vicente Rojas1,2, Verónica Delgado1,2, Eduardo Agosin2,3, Luis F Larrondo4,5.   

Abstract

Light is increasingly recognized as an efficient means of controlling diverse biological processes with high spatiotemporal resolution. Optogenetic switches are molecular devices for regulating light-controlled gene expression, protein localization, signal transduction and protein-protein interactions. Such molecular components have been mainly developed through the use of photoreceptors, which upon light stimulation undergo conformational changes passing to an active state. The current repertoires of optogenetic switches include red, blue and UV-B light photoreceptors and have been implemented in a broad spectrum of biological platforms. In this review, we revisit different optogenetic switches that have been used in diverse biological platforms, with emphasis on those used for light-controlled gene expression in the budding yeast Saccharomyces cerevisiae. The implementation of these switches overcomes the use of traditional chemical inducers, allowing precise control of gene expression at lower costs, without leaving chemical traces, and positively impacting the production of high-value metabolites and heterologous proteins. Additionally, we highlight the potential of utilizing this technology beyond laboratory strains, by optimizing it for use in yeasts tamed for industrial processes. Finally, we discuss how fungal photoreceptors could serve as a source of biological parts for the development of novel optogenetic switches with improved characteristics. Although optogenetic tools have had a strong impact on basic research, their use in applied sciences is still undervalued. Therefore, the invitation for the future is to utilize this technology in biotechnological and industrial settings.

Entities:  

Keywords:  Fungal photoreceptors; Light; Optogenetic switch; Synthetic biology; Yeast

Mesh:

Substances:

Year:  2017        PMID: 28210796     DOI: 10.1007/s00253-017-8178-8

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  15 in total

1.  Physical model of protein cluster positioning in growing bacteria.

Authors:  Vaibhav Wasnik; Hui Wang; Ned S Wingreen; Ranjan Mukhopadhyay
Journal:  New J Phys       Date:  2017-10-11       Impact factor: 3.729

Review 2.  Synthetic Switches and Regulatory Circuits in Plants.

Authors:  Jennifer Andres; Tim Blomeier; Matias D Zurbriggen
Journal:  Plant Physiol       Date:  2019-01-28       Impact factor: 8.340

3.  Cell-machine interfaces for characterizing gene regulatory network dynamics.

Authors:  Jean-Baptiste Lugagne; Mary J Dunlop
Journal:  Curr Opin Syst Biol       Date:  2019-02-01

4.  Identification and characterization of a novel light-induced promoter for recombinant protein production in Pleurotus ostreatus.

Authors:  Chaomin Yin; Xiuzhi Fan; Kun Ma; Zheya Chen; Defang Shi; Fen Yao; Hong Gao; Aimin Ma
Journal:  J Microbiol       Date:  2019-11-04       Impact factor: 3.422

Review 5.  Light-regulated promoters for tunable, temporal, and affordable control of fungal gene expression.

Authors:  Kevin K Fuller; Jay C Dunlap; Jennifer J Loros
Journal:  Appl Microbiol Biotechnol       Date:  2018-03-22       Impact factor: 4.813

6.  Shining light on molecular communication.

Authors:  Bhuvana Krishnaswamy; Megan N McClean
Journal:  ACM Int Conf Nanoscale Comput Commun (2020)       Date:  2020-10-07

7.  A yeast optogenetic toolkit (yOTK) for gene expression control in Saccharomyces cerevisiae.

Authors:  Jidapas My An-Adirekkun; Cameron J Stewart; Stephanie H Geller; Michael T Patel; Justin Melendez; Benjamin L Oakes; Marcus B Noyes; Megan N McClean
Journal:  Biotechnol Bioeng       Date:  2019-12-18       Impact factor: 4.530

8.  Optogenetics reveals Cdc42 local activation by scaffold-mediated positive feedback and Ras GTPase.

Authors:  Iker Lamas; Laura Merlini; Aleksandar Vještica; Vincent Vincenzetti; Sophie G Martin
Journal:  PLoS Biol       Date:  2020-01-24       Impact factor: 8.029

Review 9.  And Then There Was Light: Perspectives of Optogenetics for Deep Brain Stimulation and Neuromodulation.

Authors:  Jean Delbeke; Luis Hoffman; Katrien Mols; Dries Braeken; Dimiter Prodanov
Journal:  Front Neurosci       Date:  2017-12-12       Impact factor: 4.677

10.  PhiReX: a programmable and red light-regulated protein expression switch for yeast.

Authors:  Lena Hochrein; Fabian Machens; Katrin Messerschmidt; Bernd Mueller-Roeber
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

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