Literature DB >> 29569180

Light-regulated promoters for tunable, temporal, and affordable control of fungal gene expression.

Kevin K Fuller1, Jay C Dunlap2, Jennifer J Loros3,4.   

Abstract

Regulatable promoters are important genetic tools, particularly for assigning function to essential and redundant genes. They can also be used to control the expression of enzymes that influence metabolic flux or protein secretion, thereby optimizing product yield in bioindustry. This review will focus on regulatable systems for use in filamentous fungi, an important group of organisms whose members include key research models, devastating pathogens of plants and animals, and exploitable cell factories. Though we will begin by cataloging those promoters that are controlled by nutritional or chemical means, our primary focus will rest on those who can be controlled by a literal flip-of-the-switch: promoters of light-regulated genes. The vvd promoter of Neurospora will first serve as a paradigm for how light-driven systems can provide tight, robust, tunable, and temporal control of either autologous or heterologous fungal proteins. We will then discuss a theoretical approach to, and practical considerations for, the development of such promoters in other species. To this end, we have compiled genes from six previously published light-regulated transcriptomic studies to guide the search for suitable photoregulatable promoters in your fungus of interest.

Entities:  

Keywords:  Functional genomics; Fungal genetics; Photobiology; Regulatable promoters

Mesh:

Substances:

Year:  2018        PMID: 29569180      PMCID: PMC5897137          DOI: 10.1007/s00253-018-8887-7

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  102 in total

Review 1.  Principles for the buffering of genetic variation.

Authors:  J L Hartman; B Garvik; L Hartwell
Journal:  Science       Date:  2001-02-09       Impact factor: 47.728

Review 2.  Spotlight on Aspergillus nidulans photosensory systems.

Authors:  Ozgür Bayram; Gerhard H Braus; Reinhard Fischer; Julio Rodriguez-Romero
Journal:  Fungal Genet Biol       Date:  2010-05-23       Impact factor: 3.495

3.  Light-mediated participation of the VIVID-like protein of Fusarium fujikuroi VvdA in pigmentation and development.

Authors:  Marta Castrillo; Javier Avalos
Journal:  Fungal Genet Biol       Date:  2014-08-19       Impact factor: 3.495

Review 4.  Overexpression analysis of plant transcription factors.

Authors:  James Z Zhang
Journal:  Curr Opin Plant Biol       Date:  2003-10       Impact factor: 7.834

5.  VIVID is a flavoprotein and serves as a fungal blue light photoreceptor for photoadaptation.

Authors:  Carsten Schwerdtfeger; Hartmut Linden
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

6.  Novel light-regulated genes in Trichoderma atroviride: a dissection by cDNA microarrays.

Authors:  T Rosales-Saavedra; E U Esquivel-Naranjo; S Casas-Flores; P Martínez-Hernández; E Ibarra-Laclette; C Cortes-Penagos; A Herrera-Estrella
Journal:  Microbiology       Date:  2006-11       Impact factor: 2.777

7.  Tet-on, or Tet-off, that is the question: Advanced conditional gene expression in Aspergillus.

Authors:  Franziska Wanka; Timothy Cairns; Simon Boecker; Christian Berens; Anna Happel; Xiaomei Zheng; Jibin Sun; Sven Krappmann; Vera Meyer
Journal:  Fungal Genet Biol       Date:  2015-11-10       Impact factor: 3.495

8.  Essential gene identification and drug target prioritization in Aspergillus fumigatus.

Authors:  Wenqi Hu; Susan Sillaots; Sebastien Lemieux; John Davison; Sarah Kauffman; Anouk Breton; Annie Linteau; Chunlin Xin; Joel Bowman; Jeff Becker; Bo Jiang; Terry Roemer
Journal:  PLoS Pathog       Date:  2007-03       Impact factor: 6.823

9.  Biological Significance of Photoreceptor Photocycle Length: VIVID Photocycle Governs the Dynamic VIVID-White Collar Complex Pool Mediating Photo-adaptation and Response to Changes in Light Intensity.

Authors:  Arko Dasgupta; Chen-Hui Chen; ChangHwan Lee; Amy S Gladfelter; Jay C Dunlap; Jennifer J Loros
Journal:  PLoS Genet       Date:  2015-05-15       Impact factor: 5.917

10.  Assessing the effects of light on differentiation and virulence of the plant pathogen Botrytis cinerea: characterization of the White Collar Complex.

Authors:  Paulo Canessa; Julia Schumacher; Montserrat A Hevia; Paul Tudzynski; Luis F Larrondo
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

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  4 in total

1.  Identification and characterization of a novel light-induced promoter for recombinant protein production in Pleurotus ostreatus.

Authors:  Chaomin Yin; Xiuzhi Fan; Kun Ma; Zheya Chen; Defang Shi; Fen Yao; Hong Gao; Aimin Ma
Journal:  J Microbiol       Date:  2019-11-04       Impact factor: 3.422

Review 2.  Aspergillus fumigatus and Aspergillosis in 2019.

Authors:  Jean-Paul Latgé; Georgios Chamilos
Journal:  Clin Microbiol Rev       Date:  2019-11-13       Impact factor: 26.132

Review 3.  The Promoter Toolbox for Recombinant Gene Expression in Trichoderma reesei.

Authors:  Elisabeth Fitz; Franziska Wanka; Bernhard Seiboth
Journal:  Front Bioeng Biotechnol       Date:  2018-10-11

Review 4.  Enzymatic processing of lignocellulosic biomass: principles, recent advances and perspectives.

Authors:  Heidi Østby; Line Degn Hansen; Svein J Horn; Vincent G H Eijsink; Anikó Várnai
Journal:  J Ind Microbiol Biotechnol       Date:  2020-08-25       Impact factor: 3.346

  4 in total

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