Literature DB >> 28205321

An investigative graduate laboratory course for teaching modern DNA techniques.

Alexandre de Lencastre1, A Thomas Torello1, Lani C Keller1.   

Abstract

This graduate-level DNA methods laboratory course is designed to model a discovery-based research project and engages students in both traditional DNA analysis methods and modern recombinant DNA cloning techniques. In the first part of the course, students clone the Drosophila ortholog of a human disease gene of their choosing using Gateway® cloning. In the second part of the course, students examine the expression of their gene of interest in human cell lines by reverse transcription PCR and learn how to analyze data from quantitative reverse transcription PCR (qRT-PCR) experiments. The adaptability of the Gateway® cloning system is ideally suited for students to design and create different types of expression constructs to achieve a particular experimental goal (e.g., protein purification, expression in cell culture, and/or subcellular localization), and the genes chosen can be aligned to the research interests of the instructor and/or ongoing research in a department. Student evaluations indicate that the course fostered a genuine excitement for research and in depth knowledge of both the techniques performed and the theory behind them. Our long-term goal is to incorporate this DNA methods laboratory as the foundation for an integrated laboratory sequence for the Master of Science degree program in Molecular and Cellular Biology at Quinnipiac University, where students use the reagents and concepts they developed in this course in subsequent laboratory courses, including a protein methods and cell culture laboratory.
© 2017 by The International Union of Biochemistry and Molecular Biology, 45(4):351-359, 2017. © 2017 The International Union of Biochemistry and Molecular Biology.

Entities:  

Keywords:  DNA techniques; Gateway® system; Integration of research into undergraduate teaching; cloning; laboratory exercises; molecular biology; new course development

Mesh:

Substances:

Year:  2017        PMID: 28205321      PMCID: PMC5505783          DOI: 10.1002/bmb.21048

Source DB:  PubMed          Journal:  Biochem Mol Biol Educ        ISSN: 1470-8175            Impact factor:   1.160


  10 in total

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3.  Inquiry-based and research-based laboratory pedagogies in undergraduate science.

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4.  A laboratory-intensive course on RNA interference and model organisms.

Authors:  Joanna A Miller; D Scott Witherow; Susan Carson
Journal:  CBE Life Sci Educ       Date:  2009       Impact factor: 3.325

5.  An adaptable investigative graduate laboratory course for teaching protein purification.

Authors:  Christopher W Carroll; Lani C Keller
Journal:  Biochem Mol Biol Educ       Date:  2014-10-21       Impact factor: 1.160

6.  Characterization of pathogenic human MSH2 missense mutations using yeast as a model system: a laboratory course in molecular biology.

Authors:  Alison E Gammie; Naz Erdeniz
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7.  Using green and red fluorescent proteins to teach protein expression, purification, and crystallization.

Authors:  Yifeng Wu; Yangbin Zhou; Jiaping Song; Xiaojian Hu; Yu Ding; Zhihong Zhang
Journal:  Biochem Mol Biol Educ       Date:  2008-01       Impact factor: 1.160

8.  Studying human disease genes in Caenorhabditis elegans: a molecular genetics laboratory project.

Authors:  Elisabeth A Cox-Paulson; Theresa M Grana; Michelle A Harris; Janet M Batzli
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Review 9.  Transgenic solutions for the germline.

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10.  Known structure, unknown function: An inquiry-based undergraduate biochemistry laboratory course.

Authors:  Cynthia Gray; Carol W Price; Christopher T Lee; Alison H Dewald; Matthew A Cline; Charles E McAnany; Linda Columbus; Cameron Mura
Journal:  Biochem Mol Biol Educ       Date:  2015-07-06       Impact factor: 1.160

  10 in total
  1 in total

1.  Raising awareness about microbial antibiotic resistance in undergraduate dental students: a research-based strategy for teaching non-laboratory elements of a microbiology curriculum.

Authors:  Veronica Veses; Maria Del Mar Jovani-Sancho; Raquel González-Martínez; Isidoro Cortell-Ballester; Chirag C Sheth
Journal:  BMC Med Educ       Date:  2020-02-11       Impact factor: 2.463

  1 in total

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