Literature DB >> 22039344

Characterization of pathogenic human MSH2 missense mutations using yeast as a model system: a laboratory course in molecular biology.

Alison E Gammie1, Naz Erdeniz.   

Abstract

This work describes the project for an advanced undergraduate laboratory course in cell and molecular biology. One objective of the course is to teach students a variety of cellular and molecular techniques while conducting original research. A second objective is to provide instruction in science writing and data presentation by requiring comprehensive laboratory reports modeled on the primary literature. The project for the course focuses on a gene, MSH2, implicated in the most common form of inherited colorectal cancer. Msh2 is important for maintaining the fidelity of genetic material where it functions as an important component of the DNA mismatch repair machinery. The goal of the project has two parts. The first part is to create mapped missense mutation listed in the human databases in the cognate yeast MSH2 gene and to assay for defects in DNA mismatch repair. The second part of the course is directed towards understanding in what way are the variant proteins defective for mismatch repair. Protein levels are analyzed to determine if the missense alleles display decreased expression. Furthermore, the students establish whether the Msh2p variants are properly localized to the nucleus using indirect immunofluorescence and whether the altered proteins have lost their ability to interact with other subunits of the MMR complex by creating recombinant DNA molecules and employing the yeast 2-hybrid assay.

Entities:  

Keywords:  colorectal cancer; laboratory course; mismatch repair; molecular biology; undergraduate; yeast

Mesh:

Substances:

Year:  2004        PMID: 22039344      PMCID: PMC3203682          DOI: 10.1187/cbe.03-08-0006

Source DB:  PubMed          Journal:  Cell Biol Educ        ISSN: 1536-7509


  55 in total

1.  Human exonuclease I is required for 5' and 3' mismatch repair.

Authors:  Jochen Genschel; Laura R Bazemore; Paul Modrich
Journal:  J Biol Chem       Date:  2002-01-24       Impact factor: 5.157

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Journal:  Nucleic Acids Res       Date:  1997-01-15       Impact factor: 16.971

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Journal:  Mol Cell Biol       Date:  1992-06       Impact factor: 4.272

4.  Cloning, characterization and chromosomal assignment of the human genes homologous to yeast PMS1, a member of mismatch repair genes.

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Journal:  Biochem Biophys Res Commun       Date:  1994-11-15       Impact factor: 3.575

Review 5.  DNA mismatch repair and mutation avoidance pathways.

Authors:  Thomas M Marti; Christophe Kunz; Oliver Fleck
Journal:  J Cell Physiol       Date:  2002-04       Impact factor: 6.384

6.  Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast.

Authors:  P James; J Halladay; E A Craig
Journal:  Genetics       Date:  1996-12       Impact factor: 4.562

Review 7.  Mismatch repair and the hereditary non-polyposis colorectal cancer syndrome (HNPCC).

Authors:  Annegret Müller; Richard Fishel
Journal:  Cancer Invest       Date:  2002       Impact factor: 2.176

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Authors:  A E Tomkinson; Z B Mackey
Journal:  Mutat Res       Date:  1998-02       Impact factor: 2.433

9.  The Saccharomyces cerevisiae Msh2 protein specifically binds to duplex oligonucleotides containing mismatched DNA base pairs and insertions.

Authors:  E Alani; N W Chi; R Kolodner
Journal:  Genes Dev       Date:  1995-01-15       Impact factor: 11.361

10.  Redundancy of Saccharomyces cerevisiae MSH3 and MSH6 in MSH2-dependent mismatch repair.

Authors:  G T Marsischky; N Filosi; M F Kane; R Kolodner
Journal:  Genes Dev       Date:  1996-02-15       Impact factor: 11.361

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  6 in total

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Authors:  Cynthia J Brame; Wendy M Pruitt; Lucy C Robinson
Journal:  CBE Life Sci Educ       Date:  2008       Impact factor: 3.325

2.  Using affinity chromatography to investigate novel protein-protein interactions in an undergraduate cell and molecular biology lab course.

Authors:  Kenneth D Belanger
Journal:  CBE Life Sci Educ       Date:  2009       Impact factor: 3.325

3.  An investigative graduate laboratory course for teaching modern DNA techniques.

Authors:  Alexandre de Lencastre; A Thomas Torello; Lani C Keller
Journal:  Biochem Mol Biol Educ       Date:  2017-02-16       Impact factor: 1.160

4.  Isolation and characterization of Saccharomyces cerevisiae mutants defective in chromosome transmission in an undergraduate genetics research course.

Authors:  Heidi Major Sleister
Journal:  Genetics       Date:  2007-07-29       Impact factor: 4.562

5.  A high-enrollment course-based undergraduate research experience improves student conceptions of scientific thinking and ability to interpret data.

Authors:  Sara E Brownell; Daria S Hekmat-Scafe; Veena Singla; Patricia Chandler Seawell; Jamie F Conklin Imam; Sarah L Eddy; Tim Stearns; Martha S Cyert
Journal:  CBE Life Sci Educ       Date:  2015-06-01       Impact factor: 3.325

6.  Scaling Up: Adapting a Phage-Hunting Course to Increase Participation of First-Year Students in Research.

Authors:  Nancy L Staub; Marianne Poxleitner; Amanda Braley; Helen Smith-Flores; Christine M Pribbenow; Leslie Jaworski; David Lopatto; Kirk R Anders
Journal:  CBE Life Sci Educ       Date:  2016       Impact factor: 3.325

  6 in total

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