Literature DB >> 19952100

A laboratory-intensive course on RNA interference and model organisms.

Joanna A Miller1, D Scott Witherow, Susan Carson.   

Abstract

RNA interference (RNAi) is a powerful method to silence gene expression in a variety of organisms and is generating interest not only as a useful tool for research scientists but also as a novel class of therapeutics in clinical trials. Here, we report that undergraduate and graduate students with a basic molecular biology background were able to demonstrate conceptual knowledge and technical skills for using RNAi as a research tool upon completion of an intensive 8-wk RNAi course with a 2-h lecture and 5-h laboratory per week. Students were instructed on design of RNAi experiments in model organisms and perform multiweek laboratory sessions based on journal articles read and discussed in class. Using Nicotiana benthamiana, Caenorhabditis elegans, and mammalian cell culture, students analyzed the extent of silencing using both qualitative assessment of phenotypic variations and quantitative measurements of RNA levels or protein levels. We evaluated the course over two semesters, each with a separate instructor. In both semesters, we show students met expected learning outcomes as demonstrated by successful laboratory experiment results, as well as positive instructor assessments of exams and lab reports. Student self-assessments revealed increased confidence in conceptual knowledge and practical skills. Our data also suggest that the course is adaptable to different instructors with varying expertise.

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Year:  2009        PMID: 19952100      PMCID: PMC2786282          DOI: 10.1187/cbe.09-02-0012

Source DB:  PubMed          Journal:  CBE Life Sci Educ        ISSN: 1931-7913            Impact factor:   3.325


  17 in total

1.  RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.

Authors:  P D Zamore; T Tuschl; P A Sharp; D P Bartel
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

2.  Silencing of a meristematic gene using geminivirus-derived vectors.

Authors:  C Peele; C V Jordan; N Muangsan; M Turnage; E Egelkrout; P Eagle; L Hanley-Bowdoin; D Robertson
Journal:  Plant J       Date:  2001-08       Impact factor: 6.417

3.  Rational siRNA design for RNA interference.

Authors:  Angela Reynolds; Devin Leake; Queta Boese; Stephen Scaringe; William S Marshall; Anastasia Khvorova
Journal:  Nat Biotechnol       Date:  2004-02-01       Impact factor: 54.908

4.  Geminivirus vectors for transient gene silencing in plants.

Authors:  Nooduan Muangsan; Dominique Robertson
Journal:  Methods Mol Biol       Date:  2004

Review 5.  Slicer and the argonautes.

Authors:  Niraj H Tolia; Leemor Joshua-Tor
Journal:  Nat Chem Biol       Date:  2007-01       Impact factor: 15.040

Review 6.  RNA interference-based therapeutics: new strategies to fight infectious disease.

Authors:  M López-Fraga; N Wright; A Jiménez
Journal:  Infect Disord Drug Targets       Date:  2008-12

7.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

8.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.

Authors:  S M Elbashir; J Harborth; W Lendeckel; A Yalcin; K Weber; T Tuschl
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

Review 9.  Recent patents relating to siRNAs and therapeutic strategies for genetic diseases.

Authors:  Daniel Grinberg
Journal:  Recent Pat DNA Gene Seq       Date:  2008

10.  Introduction of a Chimeric Chalcone Synthase Gene into Petunia Results in Reversible Co-Suppression of Homologous Genes in trans.

Authors:  C. Napoli; C. Lemieux; R. Jorgensen
Journal:  Plant Cell       Date:  1990-04       Impact factor: 11.277

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  5 in total

1.  An investigative graduate laboratory course for teaching modern DNA techniques.

Authors:  Alexandre de Lencastre; A Thomas Torello; Lani C Keller
Journal:  Biochem Mol Biol Educ       Date:  2017-02-16       Impact factor: 1.160

2.  Using Tinbergen's Four Questions as the Framework for a Neuroscience Capstone Course.

Authors:  John Meitzen
Journal:  J Undergrad Neurosci Educ       Date:  2015-10-15

3.  Student learning outcomes and attitudes when biotechnology lab partners are of different academic levels.

Authors:  Heather B Miller; D Scott Witherow; Susan Carson
Journal:  CBE Life Sci Educ       Date:  2012       Impact factor: 3.325

4.  Studying human disease genes in Caenorhabditis elegans: a molecular genetics laboratory project.

Authors:  Elisabeth A Cox-Paulson; Theresa M Grana; Michelle A Harris; Janet M Batzli
Journal:  CBE Life Sci Educ       Date:  2012       Impact factor: 3.325

5.  A "Choose-Your-Own" Classroom-Based Activity That Promotes Scientific Inquiry about RNA Interference.

Authors:  Jeremy L Hsu
Journal:  J Microbiol Biol Educ       Date:  2019-12-18
  5 in total

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