Literature DB >> 28188863

Top-down proteomics: Where we are, where we are going?

Luca Fornelli1, Timothy K Toby1, Luis F Schachner1, Peter F Doubleday1, Kristina Srzentić1, Caroline J DeHart1, Neil L Kelleher2.   

Abstract

Entities:  

Keywords:  Intact protein; Proteoform; Top-down proteomics

Mesh：

Year:  2017        PMID： 28188863      PMCID： PMC5547015          DOI： 10.1016/j.jprot.2017.02.002

Source DB:  PubMed          Journal:  J Proteomics        ISSN： 1874-3919            Impact factor:   4.044


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  18 in total

1.  Electrospray ionization mass spectrometry and ion mobility analysis of the 20S proteasome complex.

Authors:  Joseph A Loo; Beniam Berhane; Catherine S Kaddis; Kerry M Wooding; Yongming Xie; Stanley L Kaufman; Igor V Chernushevich
Journal:  J Am Soc Mass Spectrom       Date:  2005-07       Impact factor: 3.109

2.  Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae.

Authors:  Jeffrey C Anderson; Ying Wan; Young-Mo Kim; Ljiljana Pasa-Tolic; Thomas O Metz; Scott C Peck
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

3.  21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometer: A National Resource for Ultrahigh Resolution Mass Analysis.

Authors:  Christopher L Hendrickson; John P Quinn; Nathan K Kaiser; Donald F Smith; Greg T Blakney; Tong Chen; Alan G Marshall; Chad R Weisbrod; Steven C Beu
Journal:  J Am Soc Mass Spectrom       Date:  2015-06-20       Impact factor: 3.109

4.  21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometer Greatly Expands Mass Spectrometry Toolbox.

Authors:  Jared B Shaw; Tzu-Yung Lin; Franklin E Leach; Aleksey V Tolmachev; Nikola Tolić; Errol W Robinson; David W Koppenaal; Ljiljana Paša-Tolić
Journal:  J Am Soc Mass Spectrom       Date:  2016-10-12       Impact factor: 3.109

5.  Proteoform: a single term describing protein complexity.

Authors:  Lloyd M Smith; Neil L Kelleher
Journal:  Nat Methods       Date:  2013-03       Impact factor: 28.547

6.  Allosteric mechanisms can be distinguished using structural mass spectrometry.

Authors:  Andrey Dyachenko; Ranit Gruber; Liat Shimon; Amnon Horovitz; Michal Sharon
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

7.  Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction.

Authors:  Joost Snijder; Rebecca J Burnley; Anika Wiegard; Adrien S J Melquiond; Alexandre M J J Bonvin; Ilka M Axmann; Albert J R Heck
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

Review 8.  Progress in Top-Down Proteomics and the Analysis of Proteoforms.

Authors:  Timothy K Toby; Luca Fornelli; Neil L Kelleher
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2016-06-12       Impact factor: 10.745

9.  Studying 18 MDa virus assemblies with native mass spectrometry.

Authors:  Joost Snijder; Rebecca J Rose; David Veesler; John E Johnson; Albert J R Heck
Journal:  Angew Chem Int Ed Engl       Date:  2013-02-28       Impact factor: 15.336

10.  The first pilot project of the consortium for top-down proteomics: a status report.

Authors:  Xibei Dang; Jenna Scotcher; Si Wu; Rosalie K Chu; Nikola Tolić; Ioanna Ntai; Paul M Thomas; Ryan T Fellers; Bryan P Early; Yupeng Zheng; Kenneth R Durbin; Richard D Leduc; Jeremy J Wolff; Christopher J Thompson; Jingxi Pan; Jun Han; Jared B Shaw; Joseph P Salisbury; Michael Easterling; Christoph H Borchers; Jennifer S Brodbelt; Jeffery N Agar; Ljiljana Paša-Tolić; Neil L Kelleher; Nicolas L Young
Journal:  Proteomics       Date:  2014-04-14       Impact factor: 3.984
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  22 in total

Review 1.  Redox Systems Biology: Harnessing the Sentinels of the Cysteine Redoxome.

Authors:  Jason M Held
Journal:  Antioxid Redox Signal       Date:  2019-09-09       Impact factor: 8.401

2.  Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics.

Authors:  Luca Fornelli; Kristina Srzentić; Timothy K Toby; Peter F Doubleday; Romain Huguet; Christopher Mullen; Rafael D Melani; Henrique Dos Santos Seckler; Caroline J DeHart; Chad R Weisbrod; Kenneth R Durbin; Joseph B Greer; Bryan P Early; Ryan T Fellers; Vlad Zabrouskov; Paul M Thomas; Philip D Compton; Neil L Kelleher
Journal:  Mol Cell Proteomics       Date:  2019-12-30       Impact factor: 5.911

3.  Reassembling protein complexes after controlled disassembly by top-down mass spectrometry in native mode.

Authors:  Luis F Schachner; Denise P Tran; Alexander Lee; John P McGee; Kevin Jooss; Kenneth Durbin; Henrique Dos Santos Seckler; Lauren Adams; Erika Cline; Rafael Melani; Ashley N Ives; Benjamin Des Soye; Neil L Kelleher; Steven M Patrie
Journal:  Int J Mass Spectrom       Date:  2021-03-27       Impact factor: 1.934

4.  Known and Unexplored Post-Translational Modification Pathways in Schizophrenia.

Authors:  Bradley J Smith; Victor C Carregari
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

5.  Evaluation of Machine Learning Models for Proteoform Retention and Migration Time Prediction in Top-Down Mass Spectrometry.

Authors:  Wenrong Chen; Elijah N McCool; Liangliang Sun; Yong Zang; Xia Ning; Xiaowen Liu
Journal:  J Proteome Res       Date:  2022-05-26       Impact factor: 5.370

6.  Proton Transfer Charge Reduction Enables High-Throughput Top-Down Analysis of Large Proteoforms.

Authors:  Romain Huguet; Christopher Mullen; Kristina Srzentić; Joseph B Greer; Ryan T Fellers; Vlad Zabrouskov; John E P Syka; Neil L Kelleher; Luca Fornelli
Journal:  Anal Chem       Date:  2019-11-22       Impact factor: 6.986

7.  Elucidating Proteoform Dynamics Underlying the Senescence Associated Secretory Phenotype.

Authors:  Peter F Doubleday; Luca Fornelli; Neil L Kelleher
Journal:  J Proteome Res       Date:  2020-01-28       Impact factor: 4.466

8.  Single-cell proteomics in complex tissues using microprobe capillary electrophoresis mass spectrometry.

Authors:  Camille Lombard-Banek; Sam B Choi; Peter Nemes
Journal:  Methods Enzymol       Date:  2019-08-01       Impact factor: 1.600

9.  Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry.

Authors:  Kristina Srzentić; Luca Fornelli; Yury O Tsybin; Joseph A Loo; Henrique Seckler; Jeffrey N Agar; Lissa C Anderson; Dina L Bai; Alain Beck; Jennifer S Brodbelt; Yuri E M van der Burgt; Julia Chamot-Rooke; Sneha Chatterjee; Yunqiu Chen; David J Clarke; Paul O Danis; Jolene K Diedrich; Robert A D'Ippolito; Mathieu Dupré; Natalia Gasilova; Ying Ge; Young Ah Goo; David R Goodlett; Sylvester Greer; Kim F Haselmann; Lidong He; Christopher L Hendrickson; Joshua D Hinkle; Matthew V Holt; Sam Hughes; Donald F Hunt; Neil L Kelleher; Anton N Kozhinov; Ziqing Lin; Christian Malosse; Alan G Marshall; Laure Menin; Robert J Millikin; Konstantin O Nagornov; Simone Nicolardi; Ljiljana Paša-Tolić; Stuart Pengelley; Neil R Quebbemann; Anja Resemann; Wendy Sandoval; Richa Sarin; Nicholas D Schmitt; Jeffrey Shabanowitz; Jared B Shaw; Michael R Shortreed; Lloyd M Smith; Frank Sobott; Detlev Suckau; Timothy Toby; Chad R Weisbrod; Norelle C Wildburger; John R Yates; Sung Hwan Yoon; Nicolas L Young; Mowei Zhou
Journal:  J Am Soc Mass Spectrom       Date:  2020-08-19       Impact factor: 3.109

10.  Mass spectrometry-based top-down and bottom-up approaches for proteomic analysis of the Moroccan Buthus occitanus scorpion venom.

Authors:  Khadija Daoudi; Christian Malosse; Ayoub Lafnoune; Bouchra Darkaoui; Salma Chakir; Jean-Marc Sabatier; Julia Chamot-Rooke; Rachida Cadi; Naoual Oukkache
Journal:  FEBS Open Bio       Date:  2021-05-28       Impact factor: 2.693
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