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Literature DB >> 23443629

Proteoform: a single term describing protein complexity.

Lloyd M Smith, Neil L Kelleher.

Abstract

Entities: Species

Mesh：

Substances：
Protein Isoforms

Year: 2013 PMID： 23443629 PMCID： PMC4114032 DOI： 10.1038/nmeth.2369

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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6 in total

Review 1. Post-translational modification: nature's escape from genetic imprisonment and the basis for dynamic information encoding.

Authors: Sudhakaran Prabakaran; Guy Lippens; Hanno Steen; Jeremy Gunawardena
Journal: Wiley Interdiscip Rev Syst Biol Med Date: 2012-08-15

2. The Protein Ontology: a structured representation of protein forms and complexes.

Authors: Darren A Natale; Cecilia N Arighi; Winona C Barker; Judith A Blake; Carol J Bult; Michael Caudy; Harold J Drabkin; Peter D'Eustachio; Alexei V Evsikov; Hongzhan Huang; Jules Nchoutmboube; Natalia V Roberts; Barry Smith; Jian Zhang; Cathy H Wu
Journal: Nucleic Acids Res Date: 2010-10-08 Impact factor: 16.971

3. Reorganizing the protein space at the Universal Protein Resource (UniProt).

Authors:
Journal: Nucleic Acids Res Date: 2011-11-18 Impact factor: 16.971

4. Mapping intact protein isoforms in discovery mode using top-down proteomics.

Authors: John C Tran; Leonid Zamdborg; Dorothy R Ahlf; Ji Eun Lee; Adam D Catherman; Kenneth R Durbin; Jeremiah D Tipton; Adaikkalam Vellaichamy; John F Kellie; Mingxi Li; Cong Wu; Steve M M Sweet; Bryan P Early; Nertila Siuti; Richard D LeDuc; Philip D Compton; Paul M Thomas; Neil L Kelleher
Journal: Nature Date: 2011-10-30 Impact factor: 49.962

5. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Authors: Kim D Pruitt; Tatiana Tatusova; Donna R Maglott
Journal: Nucleic Acids Res Date: 2006-11-27 Impact factor: 16.971

6. Finding one's way in proteomics: a protein species nomenclature.

Authors: Hartmut Schlüter; Rolf Apweiler; Hermann-Georg Holzhütter; Peter R Jungblut
Journal: Chem Cent J Date: 2009-09-09 Impact factor: 4.215

6 in total

443 in total

1. A comprehensive pipeline for translational top-down proteomics from a single blood draw.

Authors: Timothy K Toby; Luca Fornelli; Kristina Srzentić; Caroline J DeHart; Josh Levitsky; John Friedewald; Neil L Kelleher
Journal: Nat Protoc Date: 2019-01 Impact factor: 13.491

2. Performance metrics for evaluating system suitability in liquid chromatography--Mass spectrometry peptide mass mapping of protein therapeutics and monoclonal antibodies.

Authors: Mowei Zhou; Ashley C Gucinski; Michael T Boyne
Journal: MAbs Date: 2015-07-28 Impact factor: 5.857

3. MASH Suite Pro: A Comprehensive Software Tool for Top-Down Proteomics.

Authors: Wenxuan Cai; Huseyin Guner; Zachery R Gregorich; Albert J Chen; Serife Ayaz-Guner; Ying Peng; Santosh G Valeja; Xiaowen Liu; Ying Ge
Journal: Mol Cell Proteomics Date: 2015-11-23 Impact factor: 5.911

Review 4. A Biologist's Field Guide to Multiplexed Quantitative Proteomics.

Authors: Corey E Bakalarski; Donald S Kirkpatrick
Journal: Mol Cell Proteomics Date: 2016-02-12 Impact factor: 5.911

5. Proteoforms in Peripheral Blood Mononuclear Cells as Novel Rejection Biomarkers in Liver Transplant Recipients.

Authors: T K Toby; M Abecassis; K Kim; P M Thomas; R T Fellers; R D LeDuc; N L Kelleher; J Demetris; J Levitsky
Journal: Am J Transplant Date: 2017-06-27 Impact factor: 8.086

6. ProForma: A Standard Proteoform Notation.

Authors: Richard D LeDuc; Veit Schwämmle; Michael R Shortreed; Anthony J Cesnik; Stefan K Solntsev; Jared B Shaw; Maria J Martin; Juan A Vizcaino; Emanuele Alpi; Paul Danis; Neil L Kelleher; Lloyd M Smith; Ying Ge; Jeffrey N Agar; Julia Chamot-Rooke; Joseph A Loo; Ljiljana Pasa-Tolic; Yury O Tsybin
Journal: J Proteome Res Date: 2018-02-14 Impact factor: 4.466

Review 7. Identification and Quantification of Proteoforms by Mass Spectrometry.

Authors: Leah V Schaffer; Robert J Millikin; Rachel M Miller; Lissa C Anderson; Ryan T Fellers; Ying Ge; Neil L Kelleher; Richard D LeDuc; Xiaowen Liu; Samuel H Payne; Liangliang Sun; Paul M Thomas; Trisha Tucholski; Zhe Wang; Si Wu; Zhijie Wu; Dahang Yu; Michael R Shortreed; Lloyd M Smith
Journal: Proteomics Date: 2019-05 Impact factor: 3.984