Literature DB >> 28168761

Functional clues from the crystal structure of an orphan periplasmic ligand-binding protein from Treponema pallidum.

Chad A Brautigam1,2, Ranjit K Deka2, Wei Z Liu2, Diana R Tomchick1,3, Michael V Norgard2.   

Abstract

The spirochete Treponema pallidum is the causative agent of syphilis, a sexually transmitted infection of major global importance. Other closely related subspecies of Treponema also are the etiological agents of the endemic treponematoses, such as yaws, pinta, and bejel. The inability of T. pallidum and its close relatives to be cultured in vitro has prompted efforts to characterize T. pallidum's proteins structurally and biophysically, particularly those potentially relevant to treponemal membrane biology, with the goal of possibly revealing the functions of those proteins. This report describes the structure of the treponemal protein Tp0737; this polypeptide has a fold characteristic of a class of periplasmic ligand-binding proteins associated with ABC-type transporters. Although no ligand for the protein was observed in electron-density maps, and thus the nature of the native ligand remains obscure, the structural data described herein provide a foundation for further efforts to elucidate the ligand and thus the function of this protein in T. pallidum.
© 2017 The Protein Society.

Entities:  

Keywords:  ABC transporter; X-ray crystallography; analytical ultracentrifugation; differential scanning fluorimetry; syphilis

Mesh:

Substances:

Year:  2017        PMID: 28168761      PMCID: PMC5368063          DOI: 10.1002/pro.3133

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  54 in total

1.  Physicochemical evidence that Treponema pallidum TroA is a zinc-containing metalloprotein that lacks porin-like structure.

Authors:  R K Deka; Y H Lee; K E Hagman; D Shevchenko; C A Lingwood; C A Hasemann; M V Norgard; J D Radolf
Journal:  J Bacteriol       Date:  1999-07       Impact factor: 3.490

2.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

3.  Structural, bioinformatic, and in vivo analyses of two Treponema pallidum lipoproteins reveal a unique TRAP transporter.

Authors:  Ranjit K Deka; Chad A Brautigam; Martin Goldberg; Peter Schuck; Diana R Tomchick; Michael V Norgard
Journal:  J Mol Biol       Date:  2012-01-27       Impact factor: 5.469

Review 4.  A structural classification of substrate-binding proteins.

Authors:  Ronnie P-A Berntsson; Sander H J Smits; Lutz Schmitt; Dirk-Jan Slotboom; Bert Poolman
Journal:  FEBS Lett       Date:  2010-04-20       Impact factor: 4.124

5.  Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.

Authors:  Heath E Klock; Eric J Koesema; Mark W Knuth; Scott A Lesley
Journal:  Proteins       Date:  2008-05-01

6.  Miscellaneous algorithms for density modification.

Authors:  K Cowtan; P Main
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-07-01

7.  The re-emergence of syphilis in the United Kingdom: the new epidemic phases.

Authors:  Ian Simms; Kevin A Fenton; Matthew Ashton; Katherine M E Turner; Emma E Crawley-Boevey; Russell Gorton; Daniel Rh Thomas; Audrey Lynch; Andrew Winter; Martin J Fisher; Lorraine Lighton; Helen C Maguire; Maria Solomou
Journal:  Sex Transm Dis       Date:  2005-04       Impact factor: 2.830

Review 8.  Structure, function, and evolution of bacterial ATP-binding cassette systems.

Authors:  Amy L Davidson; Elie Dassa; Cedric Orelle; Jue Chen
Journal:  Microbiol Mol Biol Rev       Date:  2008-06       Impact factor: 11.056

9.  Increase in incidence of congenital syphilis - United States, 2012-2014.

Authors:  Virginia Bowen; John Su; Elizabeth Torrone; Sarah Kidd; Hillard Weinstock
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2015-11-13       Impact factor: 17.586

10.  Evidence for an ABC-type riboflavin transporter system in pathogenic spirochetes.

Authors:  Ranjit K Deka; Chad A Brautigam; Brent A Biddy; Wei Z Liu; Michael V Norgard
Journal:  MBio       Date:  2013-02-12       Impact factor: 7.867

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  6 in total

1.  Biophysical insights into a highly selective l-arginine-binding lipoprotein of a pathogenic treponeme.

Authors:  Ranjit K Deka; Wei Z Liu; Shih-Chia Tso; Michael V Norgard; Chad A Brautigam
Journal:  Protein Sci       Date:  2018-10-27       Impact factor: 6.725

2.  The crystal structure of the Yersinia pestis iron chaperone YiuA reveals a basic triad binding motif for the chelated metal.

Authors:  Christopher D Radka; Dongquan Chen; Lawrence J DeLucas; Stephen G Aller
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-10-26       Impact factor: 7.652

3.  Novel functional insights into a modified sugar-binding protein from Synechococcus MITS9220.

Authors:  Benjamin A Ford; Katharine A Michie; Ian T Paulsen; Bridget C Mabbutt; Bhumika S Shah
Journal:  Sci Rep       Date:  2022-03-21       Impact factor: 4.379

4.  Functional insights from proteome-wide structural modeling of Treponema pallidum subspecies pallidum, the causative agent of syphilis.

Authors:  Simon Houston; Karen Vivien Lithgow; Kara Krista Osbak; Chris Richard Kenyon; Caroline E Cameron
Journal:  BMC Struct Biol       Date:  2018-05-16

5.  Biophysical and Biochemical Characterization of TP0037, a d-Lactate Dehydrogenase, Supports an Acetogenic Energy Conservation Pathway in Treponema pallidum.

Authors:  Ranjit K Deka; Wei Z Liu; Michael V Norgard; Chad A Brautigam
Journal:  mBio       Date:  2020-09-22       Impact factor: 7.867

Review 6.  Possible effects of Treponema pallidum infection on human vascular endothelial cells.

Authors:  Bibo Xie; Tie Zhao; Sisi Zhao; Jie Zhou; Feijun Zhao
Journal:  J Clin Lab Anal       Date:  2022-03-10       Impact factor: 2.352

  6 in total

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