Literature DB >> 30242931

Biophysical insights into a highly selective l-arginine-binding lipoprotein of a pathogenic treponeme.

Ranjit K Deka1, Wei Z Liu1, Shih-Chia Tso2, Michael V Norgard1, Chad A Brautigam1,2.   

Abstract

Biophysical and biochemical studies on the lipoproteins and other periplasmic proteins from the spirochetal species Treponema pallidum have yielded numerous insights into the functioning of the organism's peculiar membrane organization, its nutritional requirements, and intermediary metabolism. However, not all T. pallidum proteins have proven to be amenable to biophysical studies. One such recalcitrant protein is Tp0309, a putative polar-amino-acid-binding protein of an ABC transporter system. To gain further information on its possible function, a homolog of the protein from the related species T. vincentii was used as a surrogate. This protein, Tv2483, was crystallized, resulting in the determination of its crystal structure at a resolution of 1.75 Å. The protein has a typical fold for a ligand-binding protein, and a single molecule of l-arginine was bound between its two lobes. Differential scanning fluorimetry and isothermal titration calorimetry experiments confirmed that l-arginine bound to the protein with unusually high selectivity. However, further comparison to Tp0309 showed differences in key amino-acid-binding residues may impart an alternate specificity for the T. pallidum protein.
© 2018 The Protein Society.

Entities:  

Keywords:  ABC transporter; Treponema; X-ray crystallography; differential scanning fluorimetry; isothermal titration calorimetry; l-arginine; ligand-binding protein; polar amino acids

Mesh:

Substances:

Year:  2018        PMID: 30242931      PMCID: PMC6237705          DOI: 10.1002/pro.3510

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  52 in total

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Authors:  Ranjit K Deka; Chad A Brautigam; Martin Goldberg; Peter Schuck; Diana R Tomchick; Michael V Norgard
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Authors:  Amy L Davidson; Elie Dassa; Cedric Orelle; Jue Chen
Journal:  Microbiol Mol Biol Rev       Date:  2008-06       Impact factor: 11.056

8.  Evidence for an ABC-type riboflavin transporter system in pathogenic spirochetes.

Authors:  Ranjit K Deka; Chad A Brautigam; Brent A Biddy; Wei Z Liu; Michael V Norgard
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9.  Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm.

Authors:  Ranjit K Deka; Chad A Brautigam; Wei Z Liu; Diana R Tomchick; Michael V Norgard
Journal:  Microbiologyopen       Date:  2015-12-02       Impact factor: 3.139

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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