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Literature DB >> 9761844

Miscellaneous algorithms for density modification.

Abstract

Various algorithms are described, developed for the dm density modification package, which have not been described elsewhere. Methods are described for the following problems: determination of the absolute scale and overall temperature factor of a data set, by a method which is less dependent on data resolution than Wilson statistics; an efficient interpolation algorithm for averaging and its application to refinement of averaging operators; a method for the automatic determination of averaging masks.

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Year: 1998 PMID： 9761844 DOI： 10.1107/s0907444997011980

Source DB: PubMed Journal: Acta Crystallogr D Biol Crystallogr ISSN： 0907-4449

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Cited

127 in total

1. The molecular basis of vancomycin resistance in clinically relevant Enterococci: crystal structure of D-alanyl-D-lactate ligase (VanA).

Authors: D I Roper; T Huyton; A Vagin; G Dodson
Journal: Proc Natl Acad Sci U S A Date: 2000-08-01 Impact factor: 11.205

2. Conserved segments 1A and 2B of the intermediate filament dimer: their atomic structures and role in filament assembly.

Authors: Sergei V Strelkov; Harald Herrmann; Norbert Geisler; Tatjana Wedig; Ralf Zimbelmann; Ueli Aebi; Peter Burkhard
Journal: EMBO J Date: 2002-03-15 Impact factor: 11.598

3. The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core.

Authors: C Mura; D Cascio; M R Sawaya; D S Eisenberg
Journal: Proc Natl Acad Sci U S A Date: 2001-05-01 Impact factor: 11.205

4. Crystal structures of the vitamin D-binding protein and its complex with actin: structural basis of the actin-scavenger system.

Authors: Ludovic R Otterbein; Christophe Cosio; Philip Graceffa; Roberto Dominguez
Journal: Proc Natl Acad Sci U S A Date: 2002-06-04 Impact factor: 11.205

Miscellaneous algorithms for density modification.

1. The molecular basis of vancomycin resistance in clinically relevant Enterococci: crystal structure of D-alanyl-D-lactate ligase (VanA).

2. Conserved segments 1A and 2B of the intermediate filament dimer: their atomic structures and role in filament assembly.

3. The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core.

4. Crystal structures of the vitamin D-binding protein and its complex with actin: structural basis of the actin-scavenger system.

5. Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus.

6. Structure and assembly of an augmented Sm-like archaeal protein 14-mer.

7. Structure of Cdc42 in a complex with the GTPase-binding domain of the cell polarity protein, Par6.

8. Crystal structure of the receptor-binding domain of human B7-2: insights into organization and signaling.

9. Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain.

10. Crystal structure of a 12 ANK repeat stack from human ankyrinR.