Literature DB >> 28144654

The small molecule JIB-04 disrupts O2 binding in the Fe-dependent histone demethylase KDM4A/JMJD2A.

Barbara Cascella1, Soon Goo Lee2, Sukrit Singh3, Joseph M Jez2, Liviu M Mirica3.   

Abstract

JIB-04, a specific inhibitor of the O2-activating, Fe-dependent histone lysine demethylases, is revealed to disrupt the binding of O2 in KDM4A/JMJD2A through a continuous O2-consumption assay, X-ray crystal structure data, and molecular docking.

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Year:  2017        PMID: 28144654      PMCID: PMC5511625          DOI: 10.1039/c6cc09882g

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  28 in total

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Authors:  Miquel Costas; Mark P Mehn; Michael P Jensen; Lawrence Que
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

2.  JmjC-domain-containing proteins and histone demethylation.

Authors:  Robert J Klose; Eric M Kallin; Yi Zhang
Journal:  Nat Rev Genet       Date:  2006-09       Impact factor: 53.242

3.  Structural basis of the recognition of a methylated histone tail by JMJD2A.

Authors:  Zhongzhou Chen; Jianye Zang; John Kappler; Xia Hong; Frances Crawford; Qin Wang; Fei Lan; Chengyu Jiang; Johnathan Whetstine; Shaodong Dai; Kirk Hansen; Yang Shi; Gongyi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-13       Impact factor: 11.205

4.  POSIT: Flexible Shape-Guided Docking For Pose Prediction.

Authors:  Brian P Kelley; Scott P Brown; Gregory L Warren; Steven W Muchmore
Journal:  J Chem Inf Model       Date:  2015-07-24       Impact factor: 4.956

5.  Structural insights into histone demethylation by JMJD2 family members.

Authors:  Zhongzhou Chen; Jianye Zang; Johnathan Whetstine; Xia Hong; Foteini Davrazou; Tatiana G Kutateladze; Michael Simpson; Qilong Mao; Cheol-Ho Pan; Shaodong Dai; James Hagman; Kirk Hansen; Yang Shi; Gongyi Zhang
Journal:  Cell       Date:  2006-05-04       Impact factor: 41.582

Review 6.  Histone lysine demethylases as targets for anticancer therapy.

Authors:  Jonas W Højfeldt; Karl Agger; Kristian Helin
Journal:  Nat Rev Drug Discov       Date:  2013-11-15       Impact factor: 84.694

7.  Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase.

Authors:  Jean-François Couture; Evys Collazo; Patricia A Ortiz-Tello; Joseph S Brunzelle; Raymond C Trievel
Journal:  Nat Struct Mol Biol       Date:  2007-06-24       Impact factor: 15.369

8.  Structural analysis of human KDM5B guides histone demethylase inhibitor development.

Authors:  Catrine Johansson; Srikannathasan Velupillai; Anthony Tumber; Aleksandra Szykowska; Edward S Hookway; Radoslaw P Nowak; Claire Strain-Damerell; Carina Gileadi; Martin Philpott; Nicola Burgess-Brown; Na Wu; Jola Kopec; Andrea Nuzzi; Holger Steuber; Ursula Egner; Volker Badock; Shonagh Munro; Nicholas B LaThangue; Sue Westaway; Jack Brown; Nick Athanasou; Rab Prinjha; Paul E Brennan; Udo Oppermann
Journal:  Nat Chem Biol       Date:  2016-05-23       Impact factor: 15.040

9.  Linking of 2-oxoglutarate and substrate binding sites enables potent and highly selective inhibition of JmjC histone demethylases.

Authors:  Esther C Y Woon; Anthony Tumber; Akane Kawamura; Lars Hillringhaus; Wei Ge; Nathan R Rose; Jerome H Y Ma; Mun Chiang Chan; Louise J Walport; Ka Hing Che; Stanley S Ng; Brian D Marsden; Udo Oppermann; Michael A McDonough; Christopher J Schofield
Journal:  Angew Chem Int Ed Engl       Date:  2012-01-12       Impact factor: 15.336

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  12 in total

Review 1.  Recent Advances with KDM4 Inhibitors and Potential Applications.

Authors:  Qiong Wu; Brandon Young; Yan Wang; Andrew M Davidoff; Zoran Rankovic; Jun Yang
Journal:  J Med Chem       Date:  2022-07-15       Impact factor: 8.039

2.  Cantharidin Inhibits Proliferation of Liver Cancer by Inducing DNA Damage via KDM4A-Dependent Histone H3K36 Demethylation.

Authors:  Chao Wei; Xiangui Deng; Shudi Gao; Xuemei Wan; Jing Chen
Journal:  Evid Based Complement Alternat Med       Date:  2022-07-11       Impact factor: 2.650

3.  Novel inhibitors of lysine (K)-specific Demethylase 4A with anticancer activity.

Authors:  Hyo Jeong Lee; Bo-Kyoung Kim; Kyoung Bin Yoon; Yong-Chul Kim; Sun-Young Han
Journal:  Invest New Drugs       Date:  2017-09-14       Impact factor: 3.850

4.  Inhibition of Jumonji Histone Demethylases Selectively Suppresses HER2+ Breast Leptomeningeal Carcinomatosis Growth via Inhibition of GMCSF Expression.

Authors:  Arunoday Bhan; Khairul I Ansari; Mike Y Chen; Rahul Jandial
Journal:  Cancer Res       Date:  2021-05-03       Impact factor: 13.312

5.  Lysine-241 Has a Role in Coupling 2OG Turnover with Substrate Oxidation During KDM4-Catalysed Histone Demethylation.

Authors:  Rebecca L Hancock; Martine I Abboud; Tristan J Smart; Emily Flashman; Akane Kawamura; Christopher J Schofield; Richard J Hopkinson
Journal:  Chembiochem       Date:  2018-04-06       Impact factor: 3.164

Review 6.  KDM4B: A Nail for Every Hammer?

Authors:  Cailin Wilson; Adam J Krieg
Journal:  Genes (Basel)       Date:  2019-02-12       Impact factor: 4.096

Review 7.  Jumonji C Demethylases in Cellular Senescence.

Authors:  Kelly E Leon; Katherine M Aird
Journal:  Genes (Basel)       Date:  2019-01-09       Impact factor: 4.096

8.  A CRISPR/Cas9 screen identifies the histone demethylase MINA53 as a novel HIV-1 latency-promoting gene (LPG).

Authors:  Huachao Huang; Weili Kong; Maxime Jean; Guillaume Fiches; Dawei Zhou; Tsuyoshi Hayashi; Jianwen Que; Netty Santoso; Jian Zhu
Journal:  Nucleic Acids Res       Date:  2019-08-22       Impact factor: 16.971

9.  Structure-Based Screening of Tetrazolylhydrazide Inhibitors versus KDM4 Histone Demethylases.

Authors:  Piotr H Małecki; Nicole Rüger; Martin Roatsch; Oxana Krylova; Andreas Link; Manfred Jung; Udo Heinemann; Manfred S Weiss
Journal:  ChemMedChem       Date:  2019-10-10       Impact factor: 3.466

10.  Multi-dimensional histone methylations for coordinated regulation of gene expression under hypoxia.

Authors:  Seongyeol Lee; Jieon Lee; Sehyun Chae; Yunwon Moon; Ho-Youl Lee; Bongju Park; Eun Gyeong Yang; Daehee Hwang; Hyunsung Park
Journal:  Nucleic Acids Res       Date:  2017-11-16       Impact factor: 16.971

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